Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01074 ATGCTCGAAATTTCCCCTTCACCGGAAAACTCCGCCGCCGCGGAGGAGGACGGTGCGGCTTCCTCCGCCGGATTTAAGGAGGAGTCTGACCGGAGTTGGGCTGGAAACCGATGGCCGCGAGAGGAGACCATCGCTTTGCTTAAGGTGAGGTCGAGTATGGATACTGTGTTTAGAGATGCAAGCCTTAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGATATAAACGAAATGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAGAGATATCAGATCAGGGAAACCGAATGGGAAAAATTATAGGTATTTTGAGCAATTAGAAGCTCTAGACAATCATCCATTGCTACCTTCCCAAGCAGATTCAATGGAAGAAATCCCAAACAATATCGTTCATAATCCAATTCCATGTTCCATAGTTAACCCAGGTTCAAATTTTGTTGAAACTACCACCACATCGATATCAACTTCGACGACGTCTTGCTCGAGCAAAGAGTCGGGTGGGGCGAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAAAGGTTAATGAATGAGGTGATTGAGAAGCAGGAGAAATTGCAAAGGAAGTTCATGGAGGCTTTGGAGAAATGTGAAGAAGAGAGGCTAGCTAGAGAAGAAGAATGGAGAGTGCAAGAATTAGCTCGAATCAAGAAAGAGCGTGAGCGTTTGAATCAAGAGAGATCAATTGCAGCTGCCAAAGATGCAGCTCTTCTTTCATTCTTGAAGATGTTCTCTGAACAGATGGGCACAGTGCCATTCCCTGAGAGCTTGATTTTGATGGAGAATTTAACAGAGAAGCAAGATGATGGTAATGTTGAGAGAAATACCAGCAATCAAGAGAATAATAATAGCAACAATGGGAATTCGAATCAGATTAGCTCGTCGTCGCGGTGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTTAGGACTAATCTGCAAATGAAGTATCAAGAGAATGGGCCAAAAGGTCCTCTGTGGGAGGAAATGTCACAAGCCATGAAGAAACTTGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATCAACAAATACTTCAAGAGAGTAAAGGAACGTAACAAAAAACGACCCGAGGATTCAAAGACATGCCCTTATTTCCAGCAGCTCGACGCATTGTACAAACTGAAATCCAAGAAAGTCGTCGTCGTCGAGAACCCAACTAAACCAAATTACGAACTGAAACCCGAGGAACTATTAATGCACATGATGGAAGGGCAAGAAGAAGAAAGCCACCAACAACCTGAATCAGCAACAGACAATGGGGAAGCTCAGAATACTGATCAGAACCAAGACGACGACGAACACGAAGACGAAGATTATCAAATTGTAGCGAAAAACAACAGCAATGAAATGGAAGTAGGCATCTAA 1461 43.33 MLEISPSPENSAAAEEDGAASSAGFKEESDRSWAGNRWPREETIALLKVRSSMDTVFRDASLKAPLWEEVSRKLAELGYKRNAKKCKEKFENIYKYHKRTRDIRSGKPNGKNYRYFEQLEALDNHPLLPSQADSMEEIPNNIVHNPIPCSIVNPGSNFVETTTTSISTSTTSCSSKESGGARKKKRKFVEFFERLMNEVIEKQEKLQRKFMEALEKCEEERLAREEEWRVQELARIKKERERLNQERSIAAAKDAALLSFLKMFSEQMGTVPFPESLILMENLTEKQDDGNVERNTSNQENNNSNNGNSNQISSSSRWPKEEIDALIQLRTNLQMKYQENGPKGPLWEEMSQAMKKLGYDRSAKRCKEKWENINKYFKRVKERNKKRPEDSKTCPYFQQLDALYKLKSKKVVVVENPTKPNYELKPEELLMHMMEGQEEESHQQPESATDNGEAQNTDQNQDDDEHEDEDYQIVAKNNSNEMEVGI 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7110059 7112390 + Cp4.1LG05g10690.1 Cpe05g01074 470279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01074 486 Gene3D - 318 379 - -
Cpe05g01074 486 Gene3D - 38 99 - -
Cpe05g01074 486 Pfam Myb/SANT-like DNA-binding domain 316 403 IPR044822 -
Cpe05g01074 486 Pfam Myb/SANT-like DNA-binding domain 36 122 IPR044822 -
Cpe05g01074 486 MobiDBLite consensus disorder prediction 289 317 - -
Cpe05g01074 486 CDD GT1 36 101 - -
Cpe05g01074 486 ProSiteProfiles Myb-like domain profile. 36 94 IPR001005 -
Cpe05g01074 486 PANTHER - 12 481 - -
Cpe05g01074 486 MobiDBLite consensus disorder prediction 435 486 - -
Cpe05g01074 486 SMART sant 34 96 IPR001005 -
Cpe05g01074 486 SMART sant 314 376 IPR001005 -
Cpe05g01074 486 Coils Coil 189 220 - -
Cpe05g01074 486 ProSiteProfiles Myb-like domain profile. 310 374 IPR001005 -
Cpe05g01074 486 MobiDBLite consensus disorder prediction 294 317 - -
Cpe05g01074 486 MobiDBLite consensus disorder prediction 1 36 - -
Cpe05g01074 486 CDD GT1 317 381 - -
Cpe05g01074 486 Coils Coil 233 253 - -
Cpe05g01074 486 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 12 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01074 - - - cmo:103499654 708.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01074 Cpe-Chr5:7110059 Cpe16g00074 Cpe-Chr16:1518395 0 dispersed
Cpe05g01074 Cpe-Chr5:7110059 Cpe02g00878 Cpe-Chr2:6200108 6.34E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49567 PF13837 Myb_DNA-bind_4 2.40E-22 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01074 Cpe_Chr05 FPKM 129.463425 136.10762 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0