Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g01077 | ATGTCGTCGTCGAACTCCCCGTGCGCAGCCTGCAAATTCCTCCGGCGAAAATGCACGCAAGAGTGCGTATTCGCCCCGTATTTCCCACCCGATCAGCCCCAGAAATTCGCCAATGTGCACAAGGTGTTCGGTGCAAGCAACGTGACAAAGCTATTGAACGAATTGAACGCCACACAGCGCGAGGACGCAGTGAACTCATTAGCCTACGAGGCAGAGTTTCGTTTGCGTGACCCTGTGTACGGATGTGTCGGCCTTATTTCAGTCCTACAACACAAGCTAAAACAAATGCAAACAGATCTCTATAACGCCAAAAAGGAGCTCTCTACTTACATTGGCTCTCAAGCTATGCTCCCAATTCTGCAGCCGCCCATTGCCGGAAACCACCCTTCCTCCTCCTCTTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCTCCTTCCTTACAATATGTTCCCCATGCTTGGAATTCCCAATTCCGCGGCCGCTCCCTCATCATCCCACCAGATGCTCATTCGTGACACGCCTCAACAGACCCAGACCCAGACCCAGAATCAGAATCAGAGTCAGAATCAGTTGTTTGAGGCGCAGCAATTGGCGGCGGCGGTGGCTGCCAGAGAACAGCAGGAGATGTTTAGGGCTTATGAGCAGAAACAAAACCAAACACAAACCCAACATCATTCGCAACGCCAACAGGAGCTGATGAGGTTCGATGGGTTCGATCCGGCTGGGAACCAAATCAATTCCTCTGGGTCTAATTTAACATTGGGGACGTTTGTTGATAATAGCTACCAAATTGAAGCGCAACCGCTTCAAGTGCAGCTGTTTCTTCAGCCCCAACAGACATTGGTTGAGCAACACCCACAAACACAACACAAGCCTGAACCCACCGCGGAGGATGGTAGGAACATGAACATGGGCCCATCGTGCTAA | 939 | 53.04 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELSTYIGSQAMLPILQPPIAGNHPSSSSSSSAAAAAAAAAAALLPYNMFPMLGIPNSAAAPSSSHQMLIRDTPQQTQTQTQNQNQSQNQLFEAQQLAAAVAAREQQEMFRAYEQKQNQTQTQHHSQRQQELMRFDGFDPAGNQINSSGSNLTLGTFVDNSYQIEAQPLQVQLFLQPQQTLVEQHPQTQHKPEPTAEDGRNMNMGPSC | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7130076 | 7131014 | - | Cp4.1LG05g10760.1 | Cpe05g01077 | 470282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g01077 | 312 | MobiDBLite | consensus disorder prediction | 285 | 312 | - | - | |
Cpe05g01077 | 312 | MobiDBLite | consensus disorder prediction | 165 | 195 | - | - | |
Cpe05g01077 | 312 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 288 | - | - | |
Cpe05g01077 | 312 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 288 | - | - | |
Cpe05g01077 | 312 | Coils | Coil | 86 | 106 | - | - | |
Cpe05g01077 | 312 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cpe05g01077 | 312 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g01077 | Cpe-Chr5:7130076 | Cpe18g00859 | Cpe-Chr18:7908787 | 7.07E-53 | dispersed | |
Cpe11g00664 | Cpe-Chr11:4450407 | Cpe05g01077 | Cpe-Chr5:7130076 | 3.23E-61 | transposed | |
Cpe16g00033 | Cpe-Chr16:429658 | Cpe05g01077 | Cpe-Chr5:7130076 | 3.16E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49569 | PF03195 | LOB | 1.50E-41 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g01077 | - | - | cmos:111434896 | 369.777 |