Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01077 ATGTCGTCGTCGAACTCCCCGTGCGCAGCCTGCAAATTCCTCCGGCGAAAATGCACGCAAGAGTGCGTATTCGCCCCGTATTTCCCACCCGATCAGCCCCAGAAATTCGCCAATGTGCACAAGGTGTTCGGTGCAAGCAACGTGACAAAGCTATTGAACGAATTGAACGCCACACAGCGCGAGGACGCAGTGAACTCATTAGCCTACGAGGCAGAGTTTCGTTTGCGTGACCCTGTGTACGGATGTGTCGGCCTTATTTCAGTCCTACAACACAAGCTAAAACAAATGCAAACAGATCTCTATAACGCCAAAAAGGAGCTCTCTACTTACATTGGCTCTCAAGCTATGCTCCCAATTCTGCAGCCGCCCATTGCCGGAAACCACCCTTCCTCCTCCTCTTCCTCCTCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTCTCCTTCCTTACAATATGTTCCCCATGCTTGGAATTCCCAATTCCGCGGCCGCTCCCTCATCATCCCACCAGATGCTCATTCGTGACACGCCTCAACAGACCCAGACCCAGACCCAGAATCAGAATCAGAGTCAGAATCAGTTGTTTGAGGCGCAGCAATTGGCGGCGGCGGTGGCTGCCAGAGAACAGCAGGAGATGTTTAGGGCTTATGAGCAGAAACAAAACCAAACACAAACCCAACATCATTCGCAACGCCAACAGGAGCTGATGAGGTTCGATGGGTTCGATCCGGCTGGGAACCAAATCAATTCCTCTGGGTCTAATTTAACATTGGGGACGTTTGTTGATAATAGCTACCAAATTGAAGCGCAACCGCTTCAAGTGCAGCTGTTTCTTCAGCCCCAACAGACATTGGTTGAGCAACACCCACAAACACAACACAAGCCTGAACCCACCGCGGAGGATGGTAGGAACATGAACATGGGCCCATCGTGCTAA 939 53.04 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELSTYIGSQAMLPILQPPIAGNHPSSSSSSSAAAAAAAAAAALLPYNMFPMLGIPNSAAAPSSSHQMLIRDTPQQTQTQTQNQNQSQNQLFEAQQLAAAVAAREQQEMFRAYEQKQNQTQTQHHSQRQQELMRFDGFDPAGNQINSSGSNLTLGTFVDNSYQIEAQPLQVQLFLQPQQTLVEQHPQTQHKPEPTAEDGRNMNMGPSC 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7130076 7131014 - Cp4.1LG05g10760.1 Cpe05g01077 470282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01077 312 MobiDBLite consensus disorder prediction 285 312 - -
Cpe05g01077 312 MobiDBLite consensus disorder prediction 165 195 - -
Cpe05g01077 312 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 288 - -
Cpe05g01077 312 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 288 - -
Cpe05g01077 312 Coils Coil 86 106 - -
Cpe05g01077 312 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cpe05g01077 312 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01077 Cpe-Chr5:7130076 Cpe18g00859 Cpe-Chr18:7908787 7.07E-53 dispersed
Cpe11g00664 Cpe-Chr11:4450407 Cpe05g01077 Cpe-Chr5:7130076 3.23E-61 transposed
Cpe16g00033 Cpe-Chr16:429658 Cpe05g01077 Cpe-Chr5:7130076 3.16E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49569 PF03195 LOB 1.50E-41 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01077 - - cmos:111434896 369.777