Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01103 ATGCTAATTCCCAGATTTCGAACTTCCCTAATTCTTAAAAATTCGTTCATTAGGTCAACTTTGGCCGCTACTCATGTCGCCTCTTTCCACTCCACGCCTGCCTCTTGCGATAAGTGGAAGAGTAAATGGAAATTCGATGATGGTGTGAGTGGAAAGGAGCCGTCAAAGAATTATGTAAGATATGTGACTCGCCAAAGGCGTGCTGATGCAAAAAAGGCTCTAAAGGACCTCCTCTACAACAGTGGATCTACCTTTCAGAACAAGGAATCAAAATGGAGTCTTGGTGATCGCTGGTCTTCTGATGAGTCATTCGATCAACCGGGCAGCTGTGATAAGAAAGGGCGAGCAAAGTCATCTACGCGAAATTTTGGGAAATCCCAGCACAAGAGATCAAAACGTAAGTTTAGAAGAGAGAGTTTCGTTAATGACTTCGACAATGATTCGGAGACAATCTTTCACGCCACATTTGGCAATAGATCATATACATGGTCCTTTGGCACACGTAAGGATTCCTTTCAAAATTCAGCATCTGGTTTTGAGTGGACAGAGTCTCCTCCTAACTGGAAGAACCAAAGAGGTACTGAATGGGAGAATTCAAGTGATTGTGAGTCTGATGAGGAGACCGCTGATGTAGGATCATGTTCAGATAGAACTATTCTGGGGTTACCAAAGACAGGTCCTTTAAAGATTGAAGAAGTTAAAGCAGCGTTCCGCTCGTCTGCTTTAAAATGGCATCCTGATAAGCATCAGAGATCTTCCAAGGCAATGGCTGAAGAGAAATTCAAACTCTGTGTTAATGCATACAAATCCTTGTGCTGCGCACTCTCTCCAGGTTAA 837 43.25 MLIPRFRTSLILKNSFIRSTLAATHVASFHSTPASCDKWKSKWKFDDGVSGKEPSKNYVRYVTRQRRADAKKALKDLLYNSGSTFQNKESKWSLGDRWSSDESFDQPGSCDKKGRAKSSTRNFGKSQHKRSKRKFRRESFVNDFDNDSETIFHATFGNRSYTWSFGTRKDSFQNSASGFEWTESPPNWKNQRGTEWENSSDCESDEETADVGSCSDRTILGLPKTGPLKIEEVKAAFRSSALKWHPDKHQRSSKAMAEEKFKLCVNAYKSLCCALSPG 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7395915 7400813 + Cp4.1LG05g11030.1 Cpe05g01103 470308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01103 278 MobiDBLite consensus disorder prediction 176 209 - -
Cpe05g01103 278 CDD DnaJ 219 272 IPR001623 -
Cpe05g01103 278 Gene3D DnaJ domain 218 272 IPR036869 -
Cpe05g01103 278 SUPERFAMILY Chaperone J-domain 207 271 IPR036869 -
Cpe05g01103 278 MobiDBLite consensus disorder prediction 95 134 - -
Cpe05g01103 278 Pfam DnaJ domain 219 272 IPR001623 -
Cpe05g01103 278 SMART dnaj_3 214 276 IPR001623 -
Cpe05g01103 278 MobiDBLite consensus disorder prediction 176 197 - -
Cpe05g01103 278 ProSiteProfiles dnaJ domain profile. 215 276 IPR001623 -
Cpe05g01103 278 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 277 - -
Cpe05g01103 278 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 1 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01103 - - - csv:101222821 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01103 Cpe-Chr5:7395915 Cpe11g00096 Cpe-Chr11:515711 2.03E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1154 . . . . . . . . . Cmo20g01136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0197 . . . Cma20g01106 . . Cpe05g01103 . Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008268 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01103 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0