Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01108 ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCGAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAACAACCTTCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGGCAGCGCTGCCGAACCATCACCACCAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGAGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGAGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATACTACTAATAGTAACAACTGTCCTAACCTTACTTATTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGTCTGGCTCTTTGCAAATGCATTGA 624 53.21 MDDIDILKSTLSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSSPSFHTAQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSALFKACQMPHAPSMSGSLQMH 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7447488 7448111 + Cp4.1LG05g11010.1 Cpe05g01108 470313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01108 207 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 45 186 - -
Cpe05g01108 207 Gene3D - 108 178 IPR036638 GO:0046983
Cpe05g01108 207 Pfam Helix-loop-helix DNA-binding domain 118 158 IPR011598 GO:0046983
Cpe05g01108 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 168 IPR036638 GO:0046983
Cpe05g01108 207 Coils Coil 148 168 - -
Cpe05g01108 207 CDD bHLH_AtIND_like 110 166 - -
Cpe05g01108 207 MobiDBLite consensus disorder prediction 55 75 - -
Cpe05g01108 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Cpe05g01108 207 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 45 186 IPR045843 GO:0003700|GO:0006355
Cpe05g01108 207 SMART finulus 115 164 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01708 Cpe-Chr2:14015822 Cpe05g01108 Cpe-Chr5:7447488 2.32E-35 dispersed
Cpe04g00746 Cpe-Chr4:7265166 Cpe05g01108 Cpe-Chr5:7447488 7.39E-13 dispersed
Cpe05g01108 Cpe-Chr5:7447488 Cpe19g00534 Cpe-Chr19:4530320 1.34E-46 dispersed
Cpe10g00964 Cpe-Chr10:5452174 Cpe05g01108 Cpe-Chr5:7447488 1.93E-23 dispersed
Cpe10g00343 Cpe-Chr10:1998127 Cpe05g01108 Cpe-Chr5:7447488 5.57E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49571 PF00010 HLH 2.40E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01108 - - cmos:111451594 333.183