Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g01108 | ATGGACGACATCGACATCCTCAAATCGACACTATCACCTTCGAACTCCATCGACATGTCGTCCACAATCCTCCTCAACAACAACAACAACAACCTTCACTACCCTCCACTCCCCTTCTTCTCCGACTTCTCATCTCCCTCCTTCCACACCGCACAGGCAGCGCTGCCGAACCATCACCACCAGAACCGGCAGAAGCGCGGCGGGGGCGGGGGCGGGGGCGGAGGAATGGCAGCAATGAGAGAGATGATATTCCGAATAGCAGCAATGCAGCCAATACAAATAGACCCAGAGGAGATAAAGGCGCCAAAGCGGCGAAACGTGAGAATCTCGAAGGACCCACAGAGCGTGGCGGCGAGGCAGCGGAGGGAGAGAATCAGCCAGAAGATTAGGATTCTGCAGCGGCTGGTGCCTGGGGGAACTAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTTCATTATGTGAAGTTCTTGAAGAGGCAAGTGCAAACGCTGGAGCAGGCAGGGTTTCACAATACTACTAATAGTAACAACTGTCCTAACCTTACTTATTCTTCTGCGCTTTTCAAAGCTTGCCAAATGCCCCACGCTCCATCTATGTCTGGCTCTTTGCAAATGCATTGA | 624 | 53.21 | MDDIDILKSTLSPSNSIDMSSTILLNNNNNNLHYPPLPFFSDFSSPSFHTAQAALPNHHHQNRQKRGGGGGGGGGMAAMREMIFRIAAMQPIQIDPEEIKAPKRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTTNSNNCPNLTYSSALFKACQMPHAPSMSGSLQMH | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7447488 | 7448111 | + | Cp4.1LG05g11010.1 | Cpe05g01108 | 470313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g01108 | 207 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 45 | 186 | - | - | |
Cpe05g01108 | 207 | Gene3D | - | 108 | 178 | IPR036638 | GO:0046983 | |
Cpe05g01108 | 207 | Pfam | Helix-loop-helix DNA-binding domain | 118 | 158 | IPR011598 | GO:0046983 | |
Cpe05g01108 | 207 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 113 | 168 | IPR036638 | GO:0046983 | |
Cpe05g01108 | 207 | Coils | Coil | 148 | 168 | - | - | |
Cpe05g01108 | 207 | CDD | bHLH_AtIND_like | 110 | 166 | - | - | |
Cpe05g01108 | 207 | MobiDBLite | consensus disorder prediction | 55 | 75 | - | - | |
Cpe05g01108 | 207 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 109 | 158 | IPR011598 | GO:0046983 | |
Cpe05g01108 | 207 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 45 | 186 | IPR045843 | GO:0003700|GO:0006355 | |
Cpe05g01108 | 207 | SMART | finulus | 115 | 164 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g01708 | Cpe-Chr2:14015822 | Cpe05g01108 | Cpe-Chr5:7447488 | 2.32E-35 | dispersed | |
Cpe04g00746 | Cpe-Chr4:7265166 | Cpe05g01108 | Cpe-Chr5:7447488 | 7.39E-13 | dispersed | |
Cpe05g01108 | Cpe-Chr5:7447488 | Cpe19g00534 | Cpe-Chr19:4530320 | 1.34E-46 | dispersed | |
Cpe10g00964 | Cpe-Chr10:5452174 | Cpe05g01108 | Cpe-Chr5:7447488 | 1.93E-23 | dispersed | |
Cpe10g00343 | Cpe-Chr10:1998127 | Cpe05g01108 | Cpe-Chr5:7447488 | 5.57E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49571 | PF00010 | HLH | 2.40E-07 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g01108 | - | - | cmos:111451594 | 333.183 |