Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01122 TGTAATTCTATGTCACAACAAGATTACCACCACGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAACCTTGTTCACACCCTTCACGAATGGCTTTGACAGATCCTCCACCACCGCCGTTGCCTCCCACCAAGACCCTGAACATCAACACTACAACCACATAGCCCACCAGATCCGAAAGGAGAAGCTCCGCCTCCAAGGCTTAGACCCGCCACCTTCTCAGCCATCCTTGGTCGGAATTGAGGAGGAGGACGACGACCAATCTGCTGGCGCTGCTGCCCTTCACCATGTCTATGACTCCACCGGAATTTTGTCTGAAATGTTCAATTTTCCTCAGCCACCACGGCCTCAAGCTGAGTGGTATGGCAACCGGCAAGAGATTAACGCCGGTGACTCCGCGGTGGCCATGCAGCTTTTTCTGATGAACCCAAACCCTCGCTCACCGCCACCGCCGCCCGTGTCGTCAACCCTCCATATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTAGTTCCGGAACAAGAAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACTATTCTTCCTCAAACCCTAACGAAGGCCGTCTTTCTTTGTCATTATCCTCATCCATAGAAGCTGCAAAAGCGGAGGAATTGAGAATGAGTGACAGCGGGTTAGTTTATCAAAACCAACATCACCCTCAACAAGTCCATGTTGGAATTGGTTCTTCTTCTAATTCTTCCTTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTCAAACCCGCACGAGAATTACTTGAGGAGTTTTGTAGCGTTGGAAGAGATCAGCTTAAAAATAATAATAACAAATTGAACAACTCAAATTTGACGTCCAACTCCCATGGCGGGGACGGTGGCGGACTCTCGTCCTCGACGTCAAAGGATCAACCGCAGCCACCGCCACCGCCCGCTTTGTCAGCCGCTGATAGAAATGAACATCAAAGGAGGAAGGTCAAATTGTTATCCATGCTTGATGAGGCATTGCAGGTGGATCGAAGATATAACCATTACTGCGAGCAAATGCAAATGGTGGTGAATTCATTCGACGTCGTGATGGGGTTCGGGGCAGCGGTGCCATACACGGTGTTGGCGCAGAATGCGATGTCGAGGCATTTCAGGTGTTTGAAGGACGCCATAACAGCGCAGCTGAAGCATAGTTGCGAGATGTTGGGTGAGAAGGATGGGGGAGGAGGTGGAAGAGGAGGGTCAGGAATAACTAAGGGAGAGACTCCAAGGCTTAAGCTGTTGGAGCAAAGGTTGAGGCAGCAACGAGCCTTCCACCAAATGGGCATGATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCTGTCAACATCTTGCGTGCCTGGCTCTTCGAGCACTTTCTTCACCCGTACCCTAGTGATGGTGATAAGCATTTGTTGGCGAGACAGACAGGCTTATCAAGAAATCAGGTATCCAACTGGTTTATTAATGCCAGGGTTCGGCTGTGGAAACCCATGGTGGAAGACATGTATCAACAAGAAGCCAAACAACACCAAGAACAACAAGAACATGATCATAATAATAATGATACAGATGAGGACACACAATCCAGTCCTCCGCCCACTTCCTCCGCCGCACCACCACCACCACCACCACCACCGCCGCCACCACCACCCTTCTCATACTACTACTCCTCCTCCTCCTCTTCCTCCGCATCCACTGCCGTAACCCAGGCGGCTGCGGCGAACTGCTTTCCGGCCAACCAGTATGAGTCAGAGCTGCAGGACACGTGTCGGCGTGTCAGCGTTCTCGCTGCACCTGATCAGCAGATGAGGACCACAAGCGGCTCAGCCACGTCTGACATCCCCGGGCCCACCAGACTCATAAGATTCGGGACCACAGCGGGTGACGTGTCGCTGACACTAGGTTTACGCCACGCCGGAAATATCCCCGACAACAACCCTTCTTTCTCCCTCAGATCCGAGTTCGGAGGCTGTTAA 2049 52.86 CNSMSQQDYHHAAAAAAAAAAATLFTPFTNGFDRSSTTAVASHQDPEHQHYNHIAHQIRKEKLRLQGLDPPPSQPSLVGIEEEDDDQSAGAAALHHVYDSTGILSEMFNFPQPPRPQAEWYGNRQEINAGDSAVAMQLFLMNPNPRSPPPPPVSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGGGGGGGGGGGGGGGGGDYSSSNPNEGRLSLSLSSSIEAAKAEELRMSDSGLVYQNQHHPQQVHVGIGSSSNSSLGVVNLLRNSKYVKPARELLEEFCSVGRDQLKNNNNKLNNSNLTSNSHGGDGGGLSSSTSKDQPQPPPPPALSAADRNEHQRRKVKLLSMLDEALQVDRRYNHYCEQMQMVVNSFDVVMGFGAAVPYTVLAQNAMSRHFRCLKDAITAQLKHSCEMLGEKDGGGGGRGGSGITKGETPRLKLLEQRLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDGDKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEAKQHQEQQEHDHNNNDTDEDTQSSPPPTSSAAPPPPPPPPPPPPPFSYYYSSSSSSSASTAVTQAAAANCFPANQYESELQDTCRRVSVLAAPDQQMRTTSGSATSDIPGPTRLIRFGTTAGDVSLTLGLRHAGNIPDNNPSFSLRSEFGGC 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7581995 7586099 + Cp4.1LG05g11240.1 Cpe05g01122 470327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01122 682 Pfam Associated with HOX 264 404 IPR006563 -
Cpe05g01122 682 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 79 669 - -
Cpe05g01122 682 SUPERFAMILY Homeodomain-like 462 528 IPR009057 -
Cpe05g01122 682 MobiDBLite consensus disorder prediction 528 548 - -
Cpe05g01122 682 CDD homeodomain 461 522 IPR001356 GO:0003677
Cpe05g01122 682 SMART HOX_1 461 525 IPR001356 GO:0003677
Cpe05g01122 682 MobiDBLite consensus disorder prediction 290 318 - -
Cpe05g01122 682 MobiDBLite consensus disorder prediction 290 338 - -
Cpe05g01122 682 MobiDBLite consensus disorder prediction 528 583 - -
Cpe05g01122 682 MobiDBLite consensus disorder prediction 557 578 - -
Cpe05g01122 682 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 669 - -
Cpe05g01122 682 Gene3D - 464 526 - -
Cpe05g01122 682 ProSiteProfiles 'Homeobox' domain profile. 458 521 IPR001356 GO:0003677
Cpe05g01122 682 SMART prehox3 258 405 IPR006563 -
Cpe05g01122 682 Pfam Homeobox KN domain 478 517 IPR008422 GO:0003677|GO:0006355
Cpe05g01122 682 MobiDBLite consensus disorder prediction 178 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00355 Cpe-Chr5:1984026 Cpe05g01122 Cpe-Chr5:7581995 6.83E-79 dispersed
Cpe05g01122 Cpe-Chr5:7581995 Cpe10g00394 Cpe-Chr10:2311453 1.22E-141 dispersed
Cpe17g00578 Cpe-Chr17:4719166 Cpe05g01122 Cpe-Chr5:7581995 4.98E-69 dispersed
Cpe16g00014 Cpe-Chr16:178969 Cpe05g01122 Cpe-Chr5:7581995 8.34E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49573 PF07526 POX 3.20E-48 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01122 - - cmax:111470356 843.573