Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01156 ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCGTCGATTGACGGCGATGATGACAGAGCGAAATGGGTTGGATCAATTAATTCCAACTCGAGCTCTTCAGCAGTGGTTTTGGAGGATGGATCCGACGCCGATGAAGCCAGCGTCGGCGAGCGCGAACACCCAGTCTCCCGGGAAAGCTTCTCGGCAACCCACCCGCCGGCAACTCGTCAGTTCTTCCCCCTGGAGAATTCCAACGTGGATGCTTCATCCGCCAGTGGCGGTGGCGGTGGTTCGACTGCGTTTCCACGAGCTCGGTGGTTCGGCGTGAAGTTCTGCCAGACAGAGCCTGTCTCCGCCGTGAGACCAATGGCGGTTCTGCAACCAATAAAGAAAAGCCGACGAGGGCCAAGGTCTCGAAGCTCTCAATATCGCGGCGTCACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGACACAGCTCATTCAGCTGCTCGAGCCTATGACAGGGCAGCTATAAAGTTTCGAGGAACAGATGCAGACATAAACTTCAGTATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGGAAGTTAACAAAGGAAGAATTTGTTCATGTTCTTCGTAGACAAAGTACATGTTATCCAAGGGGAAGCTCAAAATTTAGAGGTGTAACATTGCACAAATGTGGAAGATGGGAGGCTCGTATGGGCCAATTCTTAGGCAAAAAGTACGTTTATCTGGGGTTGTTCGATTCCGAAATCGAAGCTGCAAGAGCTTATGACAAAGCTGCTATCAAATGTAATGGCAAGGAAGCTGTCACAAACTTTGATCCCACCATATATGAGAATGAGCTTAGAACAGATGCATCATCAGGCAATGTGTTGGAACAAAATCTTGATTTGAGGTTAGGAAATTCAAGCTCAAAACAACACACAAATGATATGCAAAATAAGGTGAGAATTTCAGCTATATTCTGTGTATTTGAGTTAAGATTGTGGCTATATTCGATGACGATGATGATGACGATGACGATCCAGGAATCAAATGTACTTGAGAAGATGCAGTTTGGTAGCGAAACGACTGTTCGATGTCCACGCTCCATCGACACAACGATACATGGGCAGTCTCCATATATGAATGAATCAAACTCTGAGATCGACGTGTCGCTGAGTTTGAGTGAAAGGCAGCAATGGCAGCAAGGTTGTGGTGGCTATGAACAAATTGGAACAGCGGCAGCAGCATCATCAGGATTCCCACAAATTCAGGTTAACTTGAATTTCAAGGGTCGAGTTTAG 1344 47.32 MWDLNDSPDHGGTDEFEGLSSIDGDDDRAKWVGSINSNSSSSAVVLEDGSDADEASVGEREHPVSRESFSATHPPATRQFFPLENSNVDASSASGGGGGSTAFPRARWFGVKFCQTEPVSAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTDADINFSIEDYEEDLKQMGKLTKEEFVHVLRRQSTCYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPTIYENELRTDASSGNVLEQNLDLRLGNSSSKQHTNDMQNKVRISAIFCVFELRLWLYSMTMMMTMTIQESNVLEKMQFGSETTVRCPRSIDTTIHGQSPYMNESNSEIDVSLSLSERQQWQQGCGGYEQIGTAAAASSGFPQIQVNLNFKGRV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7851229 7854694 + Cp4.1LG05g11500.1 Cpe05g01156 470361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01156 447 Pfam AP2 domain 235 284 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 MobiDBLite consensus disorder prediction 53 67 - -
Cpe05g01156 447 MobiDBLite consensus disorder prediction 1 80 - -
Cpe05g01156 447 CDD AP2 235 295 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 MobiDBLite consensus disorder prediction 32 46 - -
Cpe05g01156 447 CDD AP2 144 199 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 SUPERFAMILY DNA-binding domain 235 294 IPR016177 GO:0003677
Cpe05g01156 447 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Cpe05g01156 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 436 - -
Cpe05g01156 447 SMART rav1_2 236 299 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 SMART rav1_2 144 206 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 Gene3D AP2/ERF domain 235 294 IPR036955 GO:0003700|GO:0006355
Cpe05g01156 447 Gene3D AP2/ERF domain 143 202 IPR036955 GO:0003700|GO:0006355
Cpe05g01156 447 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 436 - -
Cpe05g01156 447 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700|GO:0006355
Cpe05g01156 447 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00229 Cpe-Chr1:1301560 Cpe05g01156 Cpe-Chr5:7851229 1.64E-09 dispersed
Cpe01g01135 Cpe-Chr1:6736665 Cpe05g01156 Cpe-Chr5:7851229 6.23E-10 dispersed
Cpe03g00153 Cpe-Chr3:770883 Cpe05g01156 Cpe-Chr5:7851229 2.60E-09 dispersed
Cpe05g00875 Cpe-Chr5:5758181 Cpe05g01156 Cpe-Chr5:7851229 3.10E-104 dispersed
Cpe05g01156 Cpe-Chr5:7851229 Cpe16g00565 Cpe-Chr16:6443669 6.03E-102 dispersed
Cpe05g01156 Cpe-Chr5:7851229 Cpe10g00444 Cpe-Chr10:2595462 6.04E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49577 PF00847 AP2 1.80E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01156 K09284 - csv:101208665 607.06