Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01164 ATGGAGTGGGTTCGAGGACATGAACTGGGTCGTGGAAATTTTGGGACGATCAGTTTAGCAAGACTCATAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCTGTTTCGGTGTCCTCTGTTTCGCTGAAGAACGAGAAGAAGGTTTTGGATCGAATTGGGAATTGCCCGCAAATCGTTACTTGTTTTGGTGATGGATTTAGTGTTGAAAGAGATGGGGAGAAGTATTATAATCTGTTCTTGGAGTATGCCAATGGCGGAAGCCTTGCGGATACTGTGAAACTCCACGGCGGTGGGTTGCTGGAATTTGATGTTCGACGGTATACGAGGGCGATTCTTTGTGGGCTTCGGCATGTTCATGGTAATGGGTTTGTTCATTGTGATTTCAAGCTTTCCAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTTGGGCTTGCGAAAGAGGCCGCGGCGGCGGAAACAGAGGAAACAGAGGAGAAATTTGAGTGGAGAGGGACGCCGATGTATATGTCGCCAGAGACGGTAAACGGCGGGAAGTATGCGCCGCCGTGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGGAGGAAAGCCGGCGTGGAGGGTTAAGTCAGAAACGGATATATTTGGGCTGATGATGATGATCGGAGTCGGAGACAAAGTGCCGGAGATGCCAGAGAATTTATCGGAGGAAGGGAAAGATTTTCTCCGTCGGTGTTTCGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTCTGAATCACCCATTTGTGGCCGGTGCCGGTGAGACTGTTACATTAAAAGAATCGAACCTGACAACCGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCTTCAAATCAACGTTGCGACGAGATGAATTTGTGTTGTTCTAGTTCCACGGCGGAGATGATGAATAGACTCCGACGGCTAGTGACGGAGAAGCCATTGGATTGGTCTGTTACAGAAAGTTGGGTGACAGTGAGGTGA 1041 49.47 MEWVRGHELGRGNFGTISLARLIKGFDQFPPLMAVKSSVSVSVSSVSLKNEKKVLDRIGNCPQIVTCFGDGFSVERDGEKYYNLFLEYANGGSLADTVKLHGGGLLEFDVRRYTRAILCGLRHVHGNGFVHCDFKLSNVLVFGNGEVKIADFGLAKEAAAAETEETEEKFEWRGTPMYMSPETVNGGKYAPPCDVWALGCAVVEMVGGKPAWRVKSETDIFGLMMMIGVGDKVPEMPENLSEEGKDFLRRCFVKDPRKRWTAEMLLNHPFVAGAGETVTLKESNLTTESPTGPFDFPEFVCSSNQRCDEMNLCCSSSTAEMMNRLRRLVTEKPLDWSVTESWVTVR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7934777 7935817 + Cp4.1LG05g11600.1 Cpe05g01164 470369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01164 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Cpe05g01164 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 322 - -
Cpe05g01164 346 SUPERFAMILY Protein kinase-like (PK-like) 3 303 IPR011009 -
Cpe05g01164 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 322 - -
Cpe05g01164 346 CDD STKc_MAPKKK 2 271 - -
Cpe05g01164 346 Pfam Protein kinase domain 5 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01164 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cpe05g01164 346 ProSiteProfiles Protein kinase domain profile. 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01164 346 Gene3D Transferase(Phosphotransferase) domain 1 2 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01164 Cpe-Chr5:7934777 Cpe16g00131 Cpe-Chr16:2986556 0 dispersed
Cpe05g01164 Cpe-Chr5:7934777 Cpe10g00777 Cpe-Chr10:4420219 8.22E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62437 PF00069 Pkinase 5.30E-51 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01164 - - csv:101214756 559.296