Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01165 ATGGCGGACGAGCAGCCTTCAGCCGCAAATCGCCGGAGGAGCCGAGGATCTGAGGCAACCGCTCGCCTTCAGGCTCTGGAACGTCTCAAAGCCATCCGCACTGGCGGCCGTCGATCAGAAGCCGGTGGTTTCCAAGTTAAGTTGGAGAACCCTATCTACGATACGATTCCCGAGGATGAGTATGATGCTCTTGTTGCAAAGCGTCGGGAAGAAGCCCGAGGGTTTATTGTTGACGACGACGGTCTTGGATATGGAGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGGATTTGTTTCTCTGATGAGTCTGATGGCGAGCCTGAGAAACCTAAGAAGAGGAAATCAGAGAAGAAAGAAGCGCAACCGAAGAAGCCCTCTTCTACTTCTCTGTCGGCGGCGGCTGCGATGATGGGGAAACAGAAACTTTCTTCGATGTTCACTTCCTCGATCTTCAGGAAAACGGGTAAAGATGATAAGGCTAAAGGGTTGGCTTGTGACAGTATTGTCGATGATGTGATTGCCGAATTTGCGCCGGATGAGACTGATAGAGAGCGGCGTAGAAAGGGGCAAATCGGAGCTACACCAATATCGAAAACATTTGCGCCTGTTCCTTCTATGAAATGCGAGGGAGTAATTGCTCAGAGTCTTAATTTAACTGGTGGATCTGAATTGGTTAAGGGTACTGTAAACGGGAACTCTGGAATGACCAAGGATTTCACAAACAGTGATTTGGAGTCTGTGCGAGCTGATATAGAGATCCAGGGAAATGGTGAAACTAAGAAATTTGATTCAAAGGATGATTTAGATTCTGAAATCAATCTGGTTTCAGTTGGGCAATCTCATAATCCTTCGATCAAGGAAGATGTAATTGAAGATAATATGCCAATTGTGGTTGAAACGAAGTCAGAATCTTTAGTGAAGAAGGAGCCGGTTTGTACTTTGAATGCTACGATTAGCGATGTAAAAGACCCAGCTTTGAGTGCCACTGCGGGATGGCAAGCAGTGAGAAGTGAAGGGAGTGGAAATGCTGATTCTGCTGCAGATACTTCTGAAGATAAATCCCATTTTGATATTGACGCTGATGGCTCTCTGCCTTTCTATATGGTTGATGCGCATGAGGAGCTCTTCGGTGCAAATATGGGCACCGTATATCTGTTTGGCAAGGTCAAAGCTGGAGATACGTACCACAGTTGTTGTGTGGTGGTGAAAAACGTGCAGAGATGCGTATATGCCATTCCAAGTGCCTCTTTTCTTCATTCGGATGAGATGTTGAAGCTTCAGAACGATGCCGAACAATCCCAGCTTTCTCCTACAGATCTGCGTACCAAGTTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATAGCTCAGCAGTTGCTAGATCTCAATGTTCCAACATTTAGCATGACACCCGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTACGGGGGAAAATTATGTTCTTAAGATTAATTACCCATTCAAGCATCCCCCACTTCCTGCTGATCTAAAAGGAGAATCCTTCTGTGCACTCTTAGGAACACATCGCAGTGCCTTGGAGCTTCTTCTCATTAAAAGGAAAATAAAGGGTCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCATGTTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAATTGACTCTCCAAAAGATGTTCAGATTTCAACTTCATCAAGCAAAACTTTGGAGATTCCTCCTATGATTGTCACTGCAATAAACATAAAGACCATTATTAATGAAAAGCAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTAGCCACAGAATGGAAAAAGCCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACAGATAGAAATTCGAAGGCTGGATCAAATGTTTTAATCTGCGAGGGCAATGATGTGCTGGTTGGACACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCTGCATGTGGTCCAAAATAGGTCGTCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGGGCATTTTTGGGTCTGGAGCAAGTCCCGGAGTCATGTCTTGCATTGCTGGTCGGCTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAAGAGATTAGTTATTCTTTGACAGAGCTAGCAAAGACTCAACTTAACAAGGACCGCAAGGAAGTCACTCCTCACGATATTCCAAGAATGTACCATGCATCAGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACACGTCAGTTGACTAATATTAGTGGTAACCTCTGGGGAAGAAGTCTGCAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAGTATATTGTCCCCGACAAGATTTCAACTTATGTGAAGGAAAAAAAGATGGTTAAAAAGAGAACGAATCATGGTTCTGAGGAAAAAAATCTTGATAATGTTGATTTAGATGATGCAAATATAGAAGCTCCCAATACTGAAAGTGGAAAAGGAAAAAAGGGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTGCTCCTGGACTTCAACAGTCTGTATCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTCATTCCTTGTCTGCCGTCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTATCAAGCTCCAGCAACTTGACATTCAACAGCAGGCATTAAAGCTCACTGCAAACAGTATGTATGGATGTCTTGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTACAGAATAATCTGAACCTAGAGGTAATTTATGGTGATACCGATTCAATAATGATTCATAGTGGACTTGATGATATTGGTCAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTATAAATGTTTAGAAATTGATCTTGATGGCTTGTATAAGAGAATGCTGCTTCTGAAGAAAAAGAAATATGCAGCTGTGAAGTTGCAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGCAAGGGTCTTGATATGGTTCGTCGTGATTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGAGGACGTCACTGAATCGATACACGATTCTCTTGTGAAGATACAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACCAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACTAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTGTAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTAAAGAAGGAAGATGGAAAATGGATGATCGACATCGATTACTACCTGTCACAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATCCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCCTCTTCCCTTTTGTGTTCCATAAACGATGAGGAAAGGTATCAGGGCTGTATACCACTGACATTAACTTGCCCCAGCTGCTCTGGTACTTTTGAGTGTCCTGCTATCTTCAGTTCTATATACAAATCGGCAGATGGAAAGCAAGAAAAGGCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGCGTTGTCCGAAATGTCCTGACGAAGCTAGTGCGGGTAGAATGACTCCTGGAATGATTTCCAATCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCGATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAATATGCCACACGTGCTGTCAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCAAACTATACCCACTGCAATGGGCGTCTAATAAGAAAGTACACAGAAGTGGATTTGTACAAGCAGCTTGCATATTTTAGTCACACTTTGGATACCATACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACTTTAGAGAAAGAAATGGCTAAAATTCGGCCAATAGTAGAGTTAGCTGCATCAACAATTCAAAGTCTTCGAGATCGCAGCGCATATGGTTGGGTGCAGCTGCAGGATTTTGTAGTTACAGTTTGA 4596 42.99 MADEQPSAANRRRSRGSEATARLQALERLKAIRTGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGICFSDESDGEPEKPKKRKSEKKEAQPKKPSSTSLSAAAAMMGKQKLSSMFTSSIFRKTGKDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGATPISKTFAPVPSMKCEGVIAQSLNLTGGSELVKGTVNGNSGMTKDFTNSDLESVRADIEIQGNGETKKFDSKDDLDSEINLVSVGQSHNPSIKEDVIEDNMPIVVETKSESLVKKEPVCTLNATISDVKDPALSATAGWQAVRSEGSGNADSAADTSEDKSHFDIDADGSLPFYMVDAHEELFGANMGTVYLFGKVKAGDTYHSCCVVVKNVQRCVYAIPSASFLHSDEMLKLQNDAEQSQLSPTDLRTKLQEVTAGLKNEIAQQLLDLNVPTFSMTPVKRKYAFERQDIPTGENYVLKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCHVSQRVSWCKFEVIIDSPKDVQISTSSSKTLEIPPMIVTAINIKTIINEKQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNSKAGSNVLICEGNDVLVGHNISGFDLDVLLHRAQFCRVPSCMWSKIGRLKRSVMPKLGKGGGIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHDIPRMYHASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISTYVKEKKMVKKRTNHGSEEKNLDNVDLDDANIEAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGVIPCLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGIKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDIGQVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVTESIHDSLVKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVALRLKQMGYSTGCSVGDTIPYIICCEQGSTSGGSVGIAQRARHPDELKKEDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSINDEERYQGCIPLTLTCPSCSGTFECPAIFSSIYKSADGKQEKAVDEPTSKFWNNLRCPKCPDEASAGRMTPGMISNQVKRQAERFISMYYNGLLMCEDETCKYATRAVNLRVMGDSEKGTICPNYTHCNGRLIRKYTEVDLYKQLAYFSHTLDTIRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSLRDRSAYGWVQLQDFVVTV 1531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7937100 7949332 + Cp4.1LG05g11640.1 Cpe05g01165 470370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01165 1531 MobiDBLite consensus disorder prediction 76 137 - -
Cpe05g01165 1531 Gene3D - 580 879 IPR036397 GO:0003676
Cpe05g01165 1531 CDD POLBc_alpha 896 1299 IPR045846 GO:0003887|GO:1902975
Cpe05g01165 1531 SMART polmehr3 580 1063 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe05g01165 1531 MobiDBLite consensus disorder prediction 1 18 - -
Cpe05g01165 1531 CDD DNA_polB_alpha_exo 580 814 - -
Cpe05g01165 1531 Gene3D - 407 533 - -
Cpe05g01165 1531 Coils Coil 1077 1097 - -
Cpe05g01165 1531 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 13 1529 - -
Cpe05g01165 1531 Pfam DNA polymerase family B, exonuclease domain 395 612 IPR006133 -
Cpe05g01165 1531 Pfam DNA polymerase family B, exonuclease domain 670 757 IPR006133 -
Cpe05g01165 1531 MobiDBLite consensus disorder prediction 1 22 - -
Cpe05g01165 1531 Pfam DNA Polymerase alpha zinc finger 1322 1527 IPR015088 GO:0003887|GO:0006260
Cpe05g01165 1531 Pfam DNA polymerase family B 823 1283 IPR006134 GO:0000166|GO:0003677
Cpe05g01165 1531 Gene3D - 367 566 - -
Cpe05g01165 1531 MobiDBLite consensus disorder prediction 865 901 - -
Cpe05g01165 1531 SUPERFAMILY DNA/RNA polymerases 847 1299 IPR043502 -
Cpe05g01165 1531 Gene3D DNA Polymerase alpha, zinc finger 1322 1515 IPR038256 -
Cpe05g01165 1531 SUPERFAMILY Ribonuclease H-like 362 851 IPR012337 -
Cpe05g01165 1531 MobiDBLite consensus disorder prediction 865 882 - -
Cpe05g01165 1531 MobiDBLite consensus disorder prediction 88 124 - -
Cpe05g01165 1531 TIGRFAM pol2: DNA polymerase (pol2) 51 1281 - -
Cpe05g01165 1531 Gene3D Palm domain of DNA polymerase 902 1107 IPR023211 -
Cpe05g01165 1531 Gene3D - 1127 1313 IPR042087 -
Cpe05g01165 1531 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Cpe05g01165 1531 ProSitePatterns DNA polymerase family B signature. 1051 1059 IPR017964 GO:0000166|GO:0003676
Cpe05g01165 1531 Gene3D Helix hairpin bin 961 1012 - -
Cpe05g01165 1531 PRINTS DNA-directed DNA-polymerase family B signature 920 933 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe05g01165 1531 PRINTS DNA-directed DNA-polymerase family B signature 996 1008 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cpe05g01165 1531 PRINTS DNA-directed DNA-polymerase family B signature 1049 1057 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01165 Cpe-Chr5:7937100 Cpe19g00507 Cpe-Chr19:4315970 1.55E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01165 K02320 - csv:101211201 2626.66