Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01172 ATGCTAGGTGCAATGGGGGTCTCATTACTTAAATTGCTTCTTAGACATATTTCATCATTTTTTCAACTTTCGTCTTCTGACTACATAAATTTACAACCGACTCTGAAGTACTACCATAAAATAGAAGGGGTTTTCAAACTTTTGAAGCCAATACTGGATGCAGTTGTTGATTCAGATATAGCTTCTGATGAAGAACTTATTAAGGCATTTGAAGAACTTGATCATTCAGTTGATGAACTAAGGGTGCTGTTTGAAAATTGGCAACCATTGTCGAGTAAAGTATACTTGGTACTGCAAAGTGAAGCATTAATAACAAAGATTGGGAAATCTAGCTTGGATATATTCCAGCTTCTTCGGTCTTCAAACGAAAATCTTCCGGAGGAATTAAGTTCATCATCTCTTGAGCACTGCGTCCAAAAGATTAAGCATATTGGAAGGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGAATCAAGCAGAGGGCATTGCACCCCCCAGCTCAGATGTTTTGGTGAAACTTGCCGATTCCCTGAGCTTGAGATCAAACCAGGAGATCTTAATTGAGGCTGTAGCCCTTGAAAAGTTGAAAGAGAGTGCCGAACAAGCTGAACAAACCGGAGAAGCCGAGGACATCGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTATTACGATAAAGCAATCCCAAAGTTCGGGTCCTGTATCGATACCTACTGATTTCTGCTGCCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAACGGGTTTTTATAAAAAATTGGATCGATATGGGGCTCAATGTTTGTCCAAAGACTAGACAGACGTTGGTTCACACGAATCTTATACCTAACTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAGTTATCTGATCCCTCAAGGTCGGTGCTCGGTAGCTTCGAGTCTGATACCCATCGAGAACCCCTTTTTTCTCATTCCCCTCAGTCAGCCCGGTCTGTACTTGGTGGAACCCATCGAGATGGAAGTTCTTCCTTGCTCTCCCACTCTTTCTCTGAGGATTCCTTGTCCAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGGCTATTGCTTACAAGTACGGAAGATCAATCGGCCAAATTGGAAGAAAATGGTGGTGATTTGATTGCTAAACCATCAATGTCACCATCTAGAACCAATGTTCCAAATTCCAGTGAGGATGAACAGTCACATAGTCATAATAGGAAGGCCTCCACCTCGAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACCTCAGGGGAAGCCAATGAATCTCCTAACGTGTCAACAAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTTCCTCAACTCCCAATCACATAGAACCAGAGCTTCCACCCAGATTAGCTGACTCAAGATCTCGAGGTAATATGATGTGGCTCCGACCATCAGAGAGGTTTGCCAGTAAAATAACTACACCATCTGCTAACGAGACAAGGCCAGATATTTCAGCTATCGAAGCACAAGTTCGGAAGGTGGTCGAGGAATTGAAGAGCAGTTCACTTGAAACTTTAAGAGGTGCTACGGCTGAATTGCGGCTACTGGCGAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGAGCCATTGAACATTTGGTTAATTTGCTTCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACTGCTCTTCTAAACTTATCCATCAATGATAATAACAAAAATGCCATTGCTCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGTCCGGAGGCAAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTGAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGCTGGGTATTGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAACTTATCAATATTCCATGAAAACAAGGCTAGAATTGTTCAAGCTGGAGCCGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCTGGAATGGTTGACAAGGCAGTTGCTGTGTTGGCAAATCTCGCCACGATTCCCGAGGGAAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCCGTTCTCGTCGAGGTCGTGGAGTTGGGTTCTGCTCGAGGAAAGGAAAATGCAGCAGCAGCATTGTTGCAGCTTTGCACAACCAGCAGTAGGCATTGCAGCTCAAGCGCTTCTAAGCCATTTCAGAAGCCAGAGACATGGAAATTCAGGAAGAGGGTAAATGTTTTCATATTACAATCTTAA 2403 43.61 MLGAMGVSLLKLLLRHISSFFQLSSSDYINLQPTLKYYHKIEGVFKLLKPILDAVVDSDIASDEELIKAFEELDHSVDELRVLFENWQPLSSKVYLVLQSEALITKIGKSSLDIFQLLRSSNENLPEELSSSSLEHCVQKIKHIGREEISSVIKDAIRNQAEGIAPPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAEQTGEAEDIDQMVALVTRMHERLITIKQSQSSGPVSIPTDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDMGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRSVLGSFESDTHREPLFSHSPQSARSVLGGTHRDGSSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSTEDQSAKLEENGGDLIAKPSMSPSRTNVPNSSEDEQSHSHNRKASTSSAVSNANLSRGTSGEANESPNVSTNLTGYGSDAAGESKSEPLAAASSTPNHIEPELPPRLADSRSRGNMMWLRPSERFASKITTPSANETRPDISAIEAQVRKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEHLVNLLLSADSKIQENAVTALLNLSINDNNKNAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGIGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSSSASKPFQKPETWKFRKRVNVFILQS 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8001943 8009491 - Cp4.1LG05g11720.1 Cpe05g01172 470377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01172 800 MobiDBLite consensus disorder prediction 407 421 - -
Cpe05g01172 800 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Cpe05g01172 800 MobiDBLite consensus disorder prediction 335 367 - -
Cpe05g01172 800 Pfam Armadillo/beta-catenin-like repeat 566 603 IPR000225 GO:0005515
Cpe05g01172 800 Pfam Armadillo/beta-catenin-like repeat 648 685 IPR000225 GO:0005515
Cpe05g01172 800 Pfam Armadillo/beta-catenin-like repeat 605 644 IPR000225 GO:0005515
Cpe05g01172 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Cpe05g01172 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 698 739 IPR000225 GO:0005515
Cpe05g01172 800 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Cpe05g01172 800 Gene3D - 515 779 IPR011989 -
Cpe05g01172 800 SUPERFAMILY RING/U-box 229 317 - -
Cpe05g01172 800 MobiDBLite consensus disorder prediction 331 374 - -
Cpe05g01172 800 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Cpe05g01172 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 657 699 IPR000225 GO:0005515
Cpe05g01172 800 SUPERFAMILY ARM repeat 535 777 IPR016024 -
Cpe05g01172 800 Coils Coil 184 214 - -
Cpe05g01172 800 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 575 617 IPR000225 GO:0005515
Cpe05g01172 800 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 328 - -
Cpe05g01172 800 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 514 774 - -
Cpe05g01172 800 MobiDBLite consensus disorder prediction 429 466 - -
Cpe05g01172 800 MobiDBLite consensus disorder prediction 389 500 - -
Cpe05g01172 800 PANTHER U BOX DOMAIN-CONTAINING 12 328 - -
Cpe05g01172 800 PANTHER U BOX DOMAIN-CONTAINING 514 774 - -
Cpe05g01172 800 SMART arm_5 727 767 IPR000225 GO:0005515
Cpe05g01172 800 SMART arm_5 564 604 IPR000225 GO:0005515
Cpe05g01172 800 SMART arm_5 687 726 IPR000225 GO:0005515
Cpe05g01172 800 SMART arm_5 605 645 IPR000225 GO:0005515
Cpe05g01172 800 SMART arm_5 646 686 IPR000225 GO:0005515
Cpe05g01172 800 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01172 Cpe16g00136 CCT
Cpe05g01172 Cpe19g00648 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00132 Cpe-Chr5:673634 Cpe05g01172 Cpe-Chr5:8001943 3.34E-10 dispersed
Cpe05g01172 Cpe-Chr5:8001943 Cpe17g00897 Cpe-Chr17:6964531 1.02E-62 dispersed
Cpe08g00623 Cpe-Chr8:4106217 Cpe05g01172 Cpe-Chr5:8001943 2.47E-10 dispersed
Cpe16g00136 Cpe-Chr16:3117721 Cpe05g01172 Cpe-Chr5:8001943 0 wgd
Cpe19g00648 Cpe-Chr19:5228574 Cpe05g01172 Cpe-Chr5:8001943 1.74E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01172 - - csv:101212423 1247.26