Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01175 ATGCATCCTGATGATCATCCGCAGCAGCGGTTGTTAGAGGAGGAAGAGGAAGAAACTGCTTATGACTTAACGGAGAAGGTTGTGGTAATTGGGATCGATGAAGTGGAGTCCGATTCCGATGTGGGTATGCTTCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACTGGGCCGGGGTTTTTGATGAGCATAGCGTTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCAGGTGCGATTGGAGGGTATTCTTTATTGTGGCTTCTGTTTTGGGCTACGGCCATGGGGCTTTTGATTCAGTTGCTTTCTGCCAGGCTTGGCGTTGCCACTGGTAAGCACTTGGCCGAGCTGTGTAGAGAAGAGTACCCAACTTGGGCAAGAATTGTGCTGTGGGTTATGGCGGAATTGGCCCTTATTGGTGCGGATATACAGGAAGTTATAGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGAGCTTTGCCTCTTTGGGCTGGAGTCATCATCACTGCTTTAGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAATTGGAGGCTGTTTTTGCTGTTCTTATTGCTACTATGGCTATCGCATTTGCTTGGATGTTTGGTGAAACGAAACCAAATGGGAAAGAGCTTCTATTGGGTATTTTGATTCCCAAACTTAGCTCCAAGACAATTAAACAAGCTGTTGCAGTTGTGGGCTGTGTCATTATGCCACACAATGTGTTTCTGCACTCAGCTCTTGTGCAATCTCGAGACGTTGATTCGACGAAGAAGGGGCGGGTCCGAGAAGCTCTCAGATACTACTCCATTGAGTCCACTCTTGCACTTTTTGTTTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATGGCGAATAGCATCGGTCTCATAAACGCAGGCGAATATCTTCAAGATAAATATGGTGGAGGACTTCTCCCTATTCTGTATATCTGGGCTATTGGTTTGTTAGCTGCTGGCCAAAGTAGCACCATTACTGGTACATATGCAGGACAGTTTATAATGGGAGGCTTCCTTAACTTGAAGTTGAAAAAATGGCTTAGAGCTTTGATAACTCGGAGCTTTGCGATTGTGCCGACTATAATTGTTGCTCTCGTGTTCGAAACCTCCGACGGGATGGTCGATATTCTTAACGAATGGCTCAATGTCCTCCAGTCAATTCAGATCCCCTTTGCTCTGATTCCTCTTCTCTGTTTGGCTTCTAAGGAACATCTAATGGGCACTTTCAGAATTGGCCCCGTTTTAAAGATGTTCTCATGGCTGGTGGCAGTGTTGGTGATGGCCATTAATGGGTATCTTTTGGTGAGTTTCATCTCATCAGAAGTGAATGGACTGCTTATAGCCATTTTCGTGTTTGTCTTCATTGCTGCATATGTTGCCTTTGTTGTTTACCTCGTCTATCAAAGTATTTCCTTTTCAAGTTGGAACAACATTAACTGGAAGGCCTCCACGGTCGACGAAAACTGA 1530 44.64 MHPDDHPQQRLLEEEEEETAYDLTEKVVVIGIDEVESDSDVGMLPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIGGYSLLWLLFWATAMGLLIQLLSARLGVATGKHLAELCREEYPTWARIVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMAIAFAWMFGETKPNGKELLLGILIPKLSSKTIKQAVAVVGCVIMPHNVFLHSALVQSRDVDSTKKGRVREALRYYSIESTLALFVSFIINLFVTTVFAKAFYGTDMANSIGLINAGEYLQDKYGGGLLPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTIIVALVFETSDGMVDILNEWLNVLQSIQIPFALIPLLCLASKEHLMGTFRIGPVLKMFSWLVAVLVMAINGYLLVSFISSEVNGLLIAIFVFVFIAAYVAFVVYLVYQSISFSSWNNINWKASTVDEN 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8034289 8038161 - Cp4.1LG05g11700.1 Cpe05g01175 470380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01175 509 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 500 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 Pfam Natural resistance-associated macrophage protein 72 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 8 500 - -
Cpe05g01175 509 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cpe05g01175 509 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01618 Cpe-Chr2:13555504 Cpe05g01175 Cpe-Chr5:8034289 2.24E-90 dispersed
Cpe03g00912 Cpe-Chr3:5867368 Cpe05g01175 Cpe-Chr5:8034289 1.61E-111 dispersed
Cpe05g01175 Cpe-Chr5:8034289 Cpe10g00222 Cpe-Chr10:1270136 1.02E-20 dispersed
Cpe16g00141 Cpe-Chr16:3308876 Cpe05g01175 Cpe-Chr5:8034289 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01175 K21398 - csv:101211711 877.47