Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01177 ATGGGAACCCTCTCCTTCCCAATTGCGTCCTCCAAACCCCGCTTGTTACCGTCTCGGAGCCGAATTGCGTTTTCAAATCCTTCTCTTCAACCATCTTTCCCTTCTTCTGCGTTTTCCGTTCCTAATTTTCCCAATCTCCACCTTCGGCGGCTTGTTCTCTGCGCCACAGCGGTAAATGATCACTCGAATCACGAGGAACACCATCGTGTTCATAATCATCATCACCACCATCACCATGGTCACCACCATTGCGATCATGATGCGGAGCTGACTGGGCCTCAGAGAGCGCTGATTGGATTCGCTAAAGCTATTAGATGGACGGACTTGGCGAATTATTTGAGGGAACATTTGCAATTATGTTGCTGCTCAATGGCTTTGTTTGTTGCTGCTGCTGTTTGCCCTTATTTGGTGCCGAAACTATTTGTGAAGCCTTGCCAAAATGCTCTCATTGCCATTGCTTTTCCTTTAGTCGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGAGGAAAAGTCAACATCCATGTACTTATGGCTCTTGCAGCCTTTGCATCCATCTTTATGGGGAACGCCTTGGAAGGAGGGATATTGCTTGGCATGTTTAATTTGTCTCACATTGGTAAGAAACTCAATGCTAGCATAGCTGAATTACCTAGACTTGTTGTCGACCTTAACTTGACAATTTTAATGGTGATTGTAGCGGAAGAGTATTTTATAAGTCGTGCAATGATTGATGTCAAAGAGTTGAAGGAAAGTTATCCAGATTCTGCCCTTGTTTTAGATACAAATGAGGGTAAACTTCCAAATATTGCAGATTTGTCCTACCAGAAGGTGCCTGTCCATGATGTACAAGTGGACTCCTATCTATTGGTTGGTGCTGGTGAGTCTGTTCCTGTAGACTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACTATTGAGCACCTAACAGGTGAAATCAAACCTTTGGAGATTACGGTGGGAGACAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATCGTTAAGGCCACAAAGACCTGGAAAGAGTCGACGTTGAGCCGGATAGTGAACTTGACTGAAGAGGCACAACTGAATAAACCAAGACTTCAGAGGTGGCTGGATGAATTTGGCGAGCATTATAGCAAAGCAGTTGTGGTTTTGTCCATTGCTGTTGCGCTTGTTGGTCCAATGTTGTTCAAGTGGCCATTTATTGGTACATCAGGTTCTGTTACAAGTTCACTAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTAGCAGCATCACCTTGTGCTTTGGCCGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGCCATGTATTAGATGCTTTATCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGAAGCCTTATTTTCAAAGCAATTGAACCAATTTACGGACATCAGGTCAGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCACTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACCCACCCAATAGGAAGAGCTGTGGTTGACCATAGTTTGGGAAAAGACCTCCCTTCCTTTTCTGTCCAAAATTTGGAATATTTTCCGGGTAGAGGACTCGTTGCAATGCTGCAAGGTATTGAGGGGATATTGTTGAAAGGTGGCCATGTATTAGATGCTTTATCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGAAGCCTTATTTTCAAAGCAATTGAACCAATTTACGGACATCAGGTCAGAGAAAACAAATCAGACTTTGGTTCCTGTTGCATTCCCTGCTGTGAAGAAGAAGCACTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACCCACCCAATAGGAAGGTCTGTGAAAAAGTCAGGAACTGAAGGTGGGAAACTATTGAAAGCATCTCTGGGTTCCTTGGATTTCATCACGTCACTCTACGAATCAGATACCAAATCAAAAAAGATCAAAGAAGCTGCGAGCACGTCTTCGTATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTTACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTATAATTGCAGAATTAACGGATATAGCGAAACTTCATGTTATGATGTTGACTGGAGATCATGAATCAAGTGCAAGGAGAGTGGCAAAAGCAGTGGGCATCAAGGAAGTCTACTTCAGTCTAAAACCTGAAGATAAGCTTAGTCACGTGAAAAGTATCTCTAGGGAGCATGGTTGA 2358 43.72 MGTLSFPIASSKPRLLPSRSRIAFSNPSLQPSFPSSAFSVPNFPNLHLRRLVLCATAVNDHSNHEEHHRVHNHHHHHHHGHHHCDHDAELTGPQRALIGFAKAIRWTDLANYLREHLQLCCCSMALFVAAAVCPYLVPKLFVKPCQNALIAIAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNALEGGILLGMFNLSHIGKKLNASIAELPRLVVDLNLTILMVIVAEEYFISRAMIDVKELKESYPDSALVLDTNEGKLPNIADLSYQKVPVHDVQVDSYLLVGAGESVPVDCEVFQGSATVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAVALVGPMLFKWPFIGTSGSVTSSLACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGHVLDALSSCHTIAFDKTGTLTTGSLIFKAIEPIYGHQVRENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSLGKDLPSFSVQNLEYFPGRGLVAMLQGIEGILLKGGHVLDALSSCHTIAFDKTGTLTTGSLIFKAIEPIYGHQVRENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRSVKKSGTEGGKLLKASLGSLDFITSLYESDTKSKKIKEAASTSSYGSEFVHAALAVDGKVTLIHLEDRPHPGVSSIIAELTDIAKLHVMMLTGDHESSARRVAKAVGIKEVYFSLKPEDKLSHVKSISREHG 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8092436 8108195 + Cp4.1LG05g11820.1 Cpe05g01177 470382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01177 785 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 478 564 IPR023299 GO:0000166
Cpe05g01177 785 Gene3D - 723 784 IPR023214 -
Cpe05g01177 785 Gene3D - 469 486 IPR023214 -
Cpe05g01177 785 Gene3D - 585 602 IPR023214 -
Cpe05g01177 785 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 277 501 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe05g01177 785 Pfam haloacid dehalogenase-like hydrolase 474 569 - -
Cpe05g01177 785 ProSitePatterns E1-E2 ATPases phosphorylation site. 478 484 IPR018303 -
Cpe05g01177 785 Pfam haloacid dehalogenase-like hydrolase 590 775 - -
Cpe05g01177 785 MobiDBLite consensus disorder prediction 68 82 - -
Cpe05g01177 785 SUPERFAMILY Calcium ATPase, transduction domain A 276 362 IPR008250 -
Cpe05g01177 785 Pfam E1-E2 ATPase 273 456 - -
Cpe05g01177 785 Gene3D - 242 367 - -
Cpe05g01177 785 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 235 571 - -
Cpe05g01177 785 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 572 784 - -
Cpe05g01177 785 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 45 210 - -
Cpe05g01177 785 Gene3D - 691 722 IPR023299 GO:0000166
Cpe05g01177 785 Gene3D - 487 577 IPR023299 GO:0000166
Cpe05g01177 785 Gene3D - 603 660 IPR023299 GO:0000166
Cpe05g01177 785 MobiDBLite consensus disorder prediction 64 87 - -
Cpe05g01177 785 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 594 662 IPR023299 GO:0000166
Cpe05g01177 785 SUPERFAMILY Calcium ATPase, transmembrane domain M 178 470 IPR023298 -
Cpe05g01177 785 SUPERFAMILY HAD-like 590 785 IPR036412 -
Cpe05g01177 785 ProSitePatterns E1-E2 ATPases phosphorylation site. 594 600 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01177 Cpe-Chr5:8092436 Cpe05g01196 Cpe-Chr5:8285892 3.19E-91 dispersed
Cpe05g01177 Cpe-Chr5:8092436 Cpe18g00631 Cpe-Chr18:6534383 1.16E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01177 K01534 - qsu:112030040 734.561