Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01218 ATGACAGTTCATACTTTCCCTTACCAAATCCCATTTCCACCATTCCTTTCTTTCATCGCCAAAAGAATGGATTCCACCGCCGGAGAAGAAGTGGTTTTCCAATTCTTATCAGTCTTCCGCGTCTTCAAGAGCGGCCGCGTAGAGAGGCTCGTTCCCGCCGACACTGTTCCGCCGTCCACCGATTCACGAACTGGTGTCCAATCCAAAGACGTCCTCATCGATCCACACACCAAACTCTCCGTCCGGATCTACCTCCCCAAAGTTTCAACCTCTGCGAAGAAGCTTCCGCTCCTAATTTACATCCACGGCGGCGCTTTCTCCATCGGTTCCGTCGCGTCTTCGATCTACCACAGCCACTTGATCTCCCTCGCTGCCGAAGCCAACGCCGTCGCTGTCTCAGTCGAATACCGTCTTGCACCGGAGAATCCGCTTCCGGCGGCGTACGATGACGCCTGGAAGGCGGTGGAGTGGGTAGCGTCGCACTCCAATCGCGACGGCGCCGAGATGTGGCTGAACGAACACGCGGATTTCGACCGCGTTTTTATCGTCGGTGACAGCGCTGGGGCTAATATTTCGTACAACGTCGTGGGCCGGGCCAGCGAAAATGATAATGGGCCGGAAGGACTCAAGATAATTGGGCTGGGCTTGGTGCATCCATTTTTCATGATAGATAAGCCCGATAAGTTAATAGAGTACATCTTTCCGACGTCGACGGGTCTGGAGGATCCGAGAATGAACCCGTGGGCCAACCCGGGACTAGGGAGGTTTCGGTGCAACCGGGTCCTGATAATAGCGGCGGAACATGATTTCCTGAATGATAGGGCGCGTGGATTTCACGCGGCGCTGAGGGAGAGTGGTTGGAAGGGGTCGGTGGAGATGGTGGAGAATGAAGGCGAGGACCACGTGTTTCATTTGTTTAATCCTGACTGTGAGAAGGCTGTTGCATTGTTCAAACGAGGCCGAGATGGGGACCCGACCCTCCAGTCTCTAAAGAGGCCTTTAATCAAGGCATCGATTAATGTTGAAGCAGGCTAG 1035 54.2 MTVHTFPYQIPFPPFLSFIAKRMDSTAGEEVVFQFLSVFRVFKSGRVERLVPADTVPPSTDSRTGVQSKDVLIDPHTKLSVRIYLPKVSTSAKKLPLLIYIHGGAFSIGSVASSIYHSHLISLAAEANAVAVSVEYRLAPENPLPAAYDDAWKAVEWVASHSNRDGAEMWLNEHADFDRVFIVGDSAGANISYNVVGRASENDNGPEGLKIIGLGLVHPFFMIDKPDKLIEYIFPTSTGLEDPRMNPWANPGLGRFRCNRVLIIAAEHDFLNDRARGFHAALRESGWKGSVEMVENEGEDHVFHLFNPDCEKAVALFKRGRDGDPTLQSLKRPLIKASINVEAG 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8532978 8536321 - Cp4.1LG05g12180.1 Cpe05g01218 470423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01218 344 Pfam alpha/beta hydrolase fold 98 304 IPR013094 GO:0016787
Cpe05g01218 344 Gene3D alpha/beta hydrolase 35 322 IPR029058 -
Cpe05g01218 344 PANTHER CARBOXYLESTERASE 13-RELATED 27 319 - -
Cpe05g01218 344 SUPERFAMILY alpha/beta-Hydrolases 39 313 IPR029058 -
Cpe05g01218 344 PANTHER ARYLACETAMIDE DEACETYLASE 27 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01218 - - - cmax:111499978 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01218 Cpe-Chr5:8532978 Cpe16g00206 Cpe-Chr16:4242505 1.04E-90 dispersed
Cpe16g00204 Cpe-Chr16:4233920 Cpe05g01218 Cpe-Chr5:8532978 1.49E-80 wgd
Cpe02g00169 Cpe-Chr2:865594 Cpe05g01218 Cpe-Chr5:8532978 7.80E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g444 Blo02g00821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00303 . . . . . . . . . . . . . . . . . . . Cpe05g01218 Bhi10g02086 . . . Hepe08g1070 . . Cla09g01704 Cam09g1801 Cec09g1862 Cco09g1954 . . Cre01g0706 . Csa02g01193 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001193 1 6 2 2 1 3 2 3 3 1 2 3 2 1 2 2 3 5 2 3 1 4 5 2 3 7 2 2 2 1 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01218 Cpe_Chr05 FPKM 24.945875 27.369183 30.008696 30.407587 37.133904 34.158287 36.290062 37.13068 35.789684 36.855667