Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01219 GTTTTCTCTGTTAAGGTCATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGATTTGTTGAGTTCTATTCACATGCAACAGCTGATAAAGTGTTGCAGAACTATAATGGTGCTATGATGCCGAACACAGATCTGCCTTTCCGTCTCAATTGGGCAACCTTTAGTGGAAATGATAGGCGACCGGACACTGGTTCTGACCTATCTATATTTGTTGGTGATTTGGCTGCTGATGTAACTGATGCTATGCTGCAAGAAACTTTCTCTAGTAAATACACATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAATTCAGGTCGTTCAAAGGGTTATGGATTTGTCAGGTTTGGTGATGAAAATGAAAAGTCCAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATTCTTCACAGGCTTTAGTTCTGGCTGGTGGACATGCAAATGGCATGGCTGTTCAGGGACCACAAGATGGCGAGTCGAACAACACGACT 558 42.11 VFSVKVICNKQTGQSEGYGFVEFYSHATADKVLQNYNGAMMPNTDLPFRLNWATFSGNDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSKYTSVKGAKVVIDSNSGRSKGYGFVRFGDENEKSRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYSSQALVLAGGHANGMAVQGPQDGESNNTT 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8539375 8540730 + Cp4.1LG05g12120.1 Cpe05g01219 470424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01219 186 Gene3D - 1 54 IPR012677 -
Cpe05g01219 186 Gene3D - 55 161 IPR012677 -
Cpe05g01219 186 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 186 - -
Cpe05g01219 186 CDD RRM1_SECp43_like 1 56 - -
Cpe05g01219 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 147 IPR000504 GO:0003723
Cpe05g01219 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 55 IPR000504 GO:0003723
Cpe05g01219 186 SUPERFAMILY RNA-binding domain, RBD 52 161 IPR035979 GO:0003676
Cpe05g01219 186 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 1 186 - -
Cpe05g01219 186 CDD RRM2_SECp43_like 67 146 - -
Cpe05g01219 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 140 IPR000504 GO:0003723
Cpe05g01219 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 45 IPR000504 GO:0003723
Cpe05g01219 186 SUPERFAMILY RNA-binding domain, RBD 1 58 IPR035979 GO:0003676
Cpe05g01219 186 SMART rrm1_1 69 143 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01219 - - - cmax:111499959 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01219 Cpe-Chr5:8539375 Cpe13g00235 Cpe-Chr13:1830208 3.87E-78 dispersed
Cpe16g00208 Cpe-Chr16:4251368 Cpe05g01219 Cpe-Chr5:8539375 7.37E-131 wgd
Cpe02g00165 Cpe-Chr2:850413 Cpe05g01219 Cpe-Chr5:8539375 2.25E-84 wgd
Cpe05g01219 Cpe-Chr5:8539375 Cpe06g00147 Cpe-Chr6:796137 3.47E-86 wgd
Cpe05g01219 Cpe-Chr5:8539375 Cpe07g00462 Cpe-Chr7:2959790 2.25E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01219 Cpe_Chr05 FPKM 1.138411 0.854644 0.07551 0.016616 0.0 0.092651 0.0 0.467867 0.684662 1.318824