Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01226 ATGGACAAAAACCAAACTTTAACCAAAGATGATACTATTGCATCAGCTTCCAATGATAACATTACAATTGACAGAACGGCTGCTTCACATGCTGAAGCCAATCCTTCGGGTAACGTTGTCCTTCGACAAACAATGGCATATCACAGTGACCATCCCGACGGAACTGATGGTCATATTCCTCAAACGCAGGAGAAAATCGATCACGATCTTTCGTTTTCGAAATCAAAGCTCACAAAACTTGTTCAGGTAGGTTGCTCGGGAGCTGGAGGGACGGTGGCAGCCATGGACGTGCCGATCATGCATGCCAGTGACCGCTACGAGCTCGTCCGAGATATCGGCTCGGGCAACTTCGGGGTGGCTAGGTTGATGCGAGACAAGTACAACGATGAGCTCGTTGCTGTTAAGTACATTGAGCGAGGTGACAAGCAAGTTTGCCATAGAGATTTGAAGTTGGAGAACACATTGCTCGATGGAAGTCCGGCCCCACATCTTAAGATCTGCGACTTCGGCTATTCTAAGTCATCGGTGTTGCATTCTCAACCAAAATCGACCGTGGGAACTCCAGCTTACATAGCTCCTGAAGTGTTACTAAAAAAAGAATACGATGGGAAGATCGCTGATGTTTGGTCTTGTGGGGTGACATTGTATGTCATGTTGGTTGGAGCATACCCTTTCGAGGATCCCGAGGATCCTAAAAATTTTCGCAAAACCATTCAGAGAATTTTGAATGTTCAATACTCCATTCCCGACTATGTTCATATATCTCCCGATTGTCGACATCTCATGTCTAAAATTTTTGTTGCTGACCCAACCAAGAGGATATCAATACCAGAGATCAGAAACCATGAATGGTTCTCAAAGAACCTACCGCCCGATCTGGCGGAGGACAAGACTGCAACCACTCATAATATTGTGGAGGAGGATACCCAACCGCCGCAAACCATCGAAGAAATCATGCAGATCATCCAGGAAGCTGCCGTGGAGGCGGTCGGAGCTCAGAGCCCGAACGGCCAGTATCTGACCGGGAGTTTGGACATCGACGACGACATGGAGGAGGATTTGGAGTCGGACGTCGAGCTCGACTTGGAAAGCAGTGGGGAGATAGTTTATGCAATGTAG 1119 47.54 MDKNQTLTKDDTIASASNDNITIDRTAASHAEANPSGNVVLRQTMAYHSDHPDGTDGHIPQTQEKIDHDLSFSKSKLTKLVQVGCSGAGGTVAAMDVPIMHASDRYELVRDIGSGNFGVARLMRDKYNDELVAVKYIERGDKQVCHRDLKLENTLLDGSPAPHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTIQRILNVQYSIPDYVHISPDCRHLMSKIFVADPTKRISIPEIRNHEWFSKNLPPDLAEDKTATTHNIVEEDTQPPQTIEEIMQIIQEAAVEAVGAQSPNGQYLTGSLDIDDDMEEDLESDVELDLESSGEIVYAM 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8588148 8593542 + Cp4.1LG05g12260.1 Cpe05g01226 470431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01226 372 Pfam Protein kinase domain 142 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01226 372 PANTHER SERINE/THREONINE KINASE 96 142 - -
Cpe05g01226 372 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 143 367 - -
Cpe05g01226 372 ProSiteProfiles Protein kinase domain profile. 7 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01226 372 SMART serkin_6 106 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01226 372 PANTHER SERINE/THREONINE KINASE 143 367 - -
Cpe05g01226 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cpe05g01226 372 Gene3D Transferase(Phosphotransferase) domain 1 120 293 - -
Cpe05g01226 372 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 96 142 - -
Cpe05g01226 372 SUPERFAMILY Protein kinase-like (PK-like) 97 315 IPR011009 -
Cpe05g01226 372 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01226 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - rcu:8268159 348.206
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00263 Cpe05g01226 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01131 Cpe-Chr5:7654490 Cpe05g01226 Cpe-Chr5:8588148 4.76E-146 dispersed
Cpe05g01226 Cpe-Chr5:8588148 Cpe16g00007 Cpe-Chr16:103149 4.88E-129 dispersed
Cpe10g00344 Cpe-Chr10:2002055 Cpe05g01226 Cpe-Chr5:8588148 6.49E-08 dispersed
Cpe04g00263 Cpe-Chr4:3260186 Cpe05g01226 Cpe-Chr5:8588148 4.55E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62439 PF00069 Pkinase 7.80E-37 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01226 Cpe_Chr05 FPKM 5.464066 5.797617 7.446459 7.03707 5.336922 3.899467 5.087018 6.686386 7.003084 7.372729