Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01229 ATGAAATATTTGAATATTCTCATCTTCTTCCTCTTCCTTTCTTCTACAGTAACCCTAACGCGATCAAATCCGCCTCCGTCTGGCGGCGGTGATGGTAAGCACTTCGTTCTGGTTCACGGAGCTTGCCTTGGTGCCTGGTCGTGGTACAAGCTATCGACGCTGCTGCGCTCGGCCGGCCACCGCGTGACGGCGCTGGACATGGTCGGTGCCGGAATTGATCCGAGGGAGGCGGAGGATCTGAGATCGTTCTCCGAATATGTTCAGCCGTTGACGGATTTCATGGCGAAATTGCCGGCGGAGGAGAAGGTGATCCTGGTCGGGCACAGCCAAGGCGGGCTGTGCATTTCTAAAGCGATGGAGGATTTTCCGGATAAAATTTCTGTGGCTGTTTTCGTCGCCGCCGCCATGCCTGGCCCATCCTTGAACGCTTCATTTCTACTGGAACAGTTTCGCAAGAGGATAGACTTTGGGCCTGATACCCGTTATACATTCGAAAAGGATAAGGTTATAAAGAAAAGCTTCCAACATTGGGTGATTAAAAGAAATCCTCCTACCGATGTGGTGGAAATTAGAGGATCCGATCATATGGTGATGATATCTAAGCCATTCGATCTCTTCAACAAACTTTCTCACATTGCTCGACATTATTCT 651 49.77 MKYLNILIFFLFLSSTVTLTRSNPPPSGGGDGKHFVLVHGACLGAWSWYKLSTLLRSAGHRVTALDMVGAGIDPREAEDLRSFSEYVQPLTDFMAKLPAEEKVILVGHSQGGLCISKAMEDFPDKISVAVFVAAAMPGPSLNASFLLEQFRKRIDFGPDTRYTFEKDKVIKKSFQHWVIKRNPPTDVVEIRGSDHMVMISKPFDLFNKLSHIARHYS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8620489 8622950 - Cp4.1LG05g12340.1 Cpe05g01229 470434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01229 217 PANTHER METHYLESTERASE FAMILY MEMBER 165 215 IPR045889 -
Cpe05g01229 217 PANTHER METHYLESTERASE FAMILY MEMBER 31 166 IPR045889 -
Cpe05g01229 217 Gene3D alpha/beta hydrolase 162 217 IPR029058 -
Cpe05g01229 217 Pfam Alpha/beta hydrolase family 35 162 IPR000073 -
Cpe05g01229 217 Gene3D alpha/beta hydrolase 32 161 IPR029058 -
Cpe05g01229 217 SUPERFAMILY alpha/beta-Hydrolases 27 207 IPR029058 -
Cpe05g01229 217 PANTHER ESTERASE PIR7A-RELATED 165 215 - -
Cpe05g01229 217 PANTHER ESTERASE PIR7A-RELATED 31 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01229 - - - csv:101207795 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01229 Cpe-Chr5:8620489 Cpe10g00417 Cpe-Chr10:2440858 4.98E-06 dispersed
Cpe20g00548 Cpe-Chr20:3215489 Cpe05g01229 Cpe-Chr5:8620489 2.94E-14 dispersed
Cpe10g00416 Cpe-Chr10:2437900 Cpe05g01229 Cpe-Chr5:8620489 3.51E-43 wgd
Cpe19g00601 Cpe-Chr19:4962668 Cpe05g01229 Cpe-Chr5:8620489 9.01E-52 wgd
Cpe04g00260 Cpe-Chr4:3212897 Cpe05g01229 Cpe-Chr5:8620489 2.54E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g478 . . . . . . . . . . . . . . Sed10g2056 . . Bhi05g01159 Tan02g0871 Cmetu01g1249 . Hepe02g0559 . . . . . . . . . . Cone8ag1160 . . Lsi10g00318 . . . . . . . . . . . . . . . . . . . Cpe05g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01229 Cpe_Chr05 FPKM 7.556292 7.889473 13.61867 13.723541 22.255079 26.656357 24.054331 19.70644 21.992416 22.448277