Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01232 ATGACTGATTTTTCAGCTTTCCGAACGGGCTATCTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCCTCCACTATCCAAGCTAGGAAATTGAGAATCCCGGAAAGTTTCCTCCGGATGATCAGGGATGATCTTTCTGCAGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGCTGATAATAAGTTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCGATAAGGGTCGGGTTTTTGTTAGTATTCAGATATGAGGGAAACTCATCATTCTGTATTTTTATCTTTAATCTTAATACATCTGAGATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGCCTTTGAACTCGGGTTTTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAATCCAAATATTTACCTACTCGAGATATCGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAGTCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCTCACAGAATTAAAAAAAGTGGAGGCAAGAAGCGGAAACTTGATTCTAGCGAGCATCGTCCGTCTGCTCATAGTGAAGATTTCGGTGACAATCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAACGAGTTGTCAACGGTGCAAAAGCGTTCGAGCCCGCTAATCCCTTCTGTAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCCGATGGGAGACAGTGGCCGGTCCGGTGTCTTTATAAAGTTGGTCGGGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTCAGGGTGAGAGAAATCGTTCTCAAAGTTACCATGTTTCGTGTCATTGAAGACGCTAGACGAATGACAGAGCGCGGGGTTTTGGGTACAAAGAATTCTCCCAGAAACCAATGGAAAGTGAATCAATGGTCTGCTAAAGTTTCCGTGGAGAATTCTGTAACAGCCATGGCCGAGTCAAACGAGCAACATGCGGCTCAATCGTTCGATGAACCCTCTCCAGCGAGGAAGGCTGGCCTGTTCTATAAGCTAGTAGTGCCGTCTATTCTTCAAGACAAGAAGCTGAAAATACCGAAAAAATTTGCGAAGAAGTTTGGAGATGATCTTTCTGATTTTGTTACTCTAGTTGTTCCTAATGGTTACCGATGGGTTCTGGAATTAAAAAGACATGGCCGTAGTTTGTGGTTTGAGGATGGCTGGCATGAATTTATCAGACACCATTGCATTCAAGTTGGGCAACTCTTGGTGTTCAGATTTGAAGGAAATTCCGTTTTCAACTTTTACATGTTCAACCTGACTTCTATTTCTAATGGTTCATGCATTACTTCAAATGCTTCCTGTGAACAAAGCCCAATTGCACTTGGAAAAGAAGCTGAATGTGAGAAATTAGTTGAACTATTTGGTTACAGTTCTCCGGACCCTTCGCATTCTTCGGCCAAGAAGGCTTTTTGTGAGTCTTCAGAGCAGCAGAAATTCCATGGAAGTTCCAATGAAGCTAGCACTTCTTCGGCCAAGAAGGCTTTTTGCGAGTCTTCAGAGCAGCAGAAATTCCATGGAAGTTCCAATGAAGCTAGCACTAAGAACTTTACGCATTGGTTTGACACACAGAACCTGCATCCTCCAAAGGATTTTGATTATACACTCAAAGGTTTAGATAAGTTGCAAGTTCTAAGGTCAAATGGAGATATTGGTATTCAGTTCAATGGAGATGGGCTCGCAAAAGCTAGAGAGAATCTTTCCTTTCAATTCTCTAATGAAATAGAAGAAGGAGCCAGGAAAAAGAAGTTAAAAGTTGAACCAATTGACTACTACAATGAGCCATTATTCGAAAAAAAATGTGGAAACATCCCACATAAAATTACTAGGATGGCTTTCGGAGTTGAGGAGTTCGCGTTTGGCAATCCTTTTTGCTGGATTGTTATGAGACATTCCTATGTACGCAGAGGATTCCATCTGCATATACCGTCCAAATTTTCTGAGAAGTATCTGAAAGGGATCTCAGGCGACATCACGCTTCAGGTTTCTAGTGGAAAGCAATGGCGTGTTCGATGTGTTCGTGAAGGAAAACGTGGAAGCCCAGCCGGAACAAATCCAGTGCATTACAATGCCAATATGTTTAAGTTTTTCTCAAAGACTGATGACAACGAGGTGCCTTGA 2463 42.18 MTDFSAFRTGYLKRKMPRPYFHKLVLSSTIQARKLRIPESFLRMIRDDLSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCIFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEAIPSNQPLNSGFLRNKLFGDEWNLHQSKSASTLQSKYLPTRDIGVQFSAVEVKKSADEVRFQNLGDDAHRIKKSGGKKRKLDSSEHRPSAHSEDFGDNRFRFYESASARKRTVTAEERERVVNGAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRVREIVLKVTMFRVIEDARRMTERGVLGTKNSPRNQWKVNQWSAKVSVENSVTAMAESNEQHAAQSFDEPSPARKAGLFYKLVVPSILQDKKLKIPKKFAKKFGDDLSDFVTLVVPNGYRWVLELKRHGRSLWFEDGWHEFIRHHCIQVGQLLVFRFEGNSVFNFYMFNLTSISNGSCITSNASCEQSPIALGKEAECEKLVELFGYSSPDPSHSSAKKAFCESSEQQKFHGSSNEASTSSAKKAFCESSEQQKFHGSSNEASTKNFTHWFDTQNLHPPKDFDYTLKGLDKLQVLRSNGDIGIQFNGDGLAKARENLSFQFSNEIEEGARKKKLKVEPIDYYNEPLFEKKCGNIPHKITRMAFGVEEFAFGNPFCWIVMRHSYVRRGFHLHIPSKFSEKYLKGISGDITLQVSSGKQWRVRCVREGKRGSPAGTNPVHYNANMFKFFSKTDDNEVP 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8630927 8641843 + Cp4.1LG05g12230.1 Cpe05g01232 470437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01232 820 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 20 379 - -
Cpe05g01232 820 CDD B3_DNA 442 533 IPR003340 GO:0003677
Cpe05g01232 820 PANTHER B3 DOMAIN-CONTAINING 20 379 - -
Cpe05g01232 820 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 438 793 - -
Cpe05g01232 820 SUPERFAMILY DNA-binding pseudobarrel domain 442 533 IPR015300 -
Cpe05g01232 820 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Cpe05g01232 820 Pfam B3 DNA binding domain 287 377 IPR003340 GO:0003677
Cpe05g01232 820 Pfam B3 DNA binding domain 22 109 IPR003340 GO:0003677
Cpe05g01232 820 Pfam B3 DNA binding domain 448 529 IPR003340 GO:0003677
Cpe05g01232 820 Gene3D - 723 809 IPR015300 -
Cpe05g01232 820 Gene3D - 261 381 IPR015300 -
Cpe05g01232 820 ProSiteProfiles B3 DNA-binding domain profile. 442 535 IPR003340 GO:0003677
Cpe05g01232 820 CDD B3_DNA 282 377 IPR003340 GO:0003677
Cpe05g01232 820 SUPERFAMILY DNA-binding pseudobarrel domain 736 792 IPR015300 -
Cpe05g01232 820 SUPERFAMILY DNA-binding pseudobarrel domain 279 380 IPR015300 -
Cpe05g01232 820 CDD B3_DNA 19 111 IPR003340 GO:0003677
Cpe05g01232 820 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677
Cpe05g01232 820 PANTHER B3 DOMAIN-CONTAINING 438 793 - -
Cpe05g01232 820 Gene3D - 13 114 IPR015300 -
Cpe05g01232 820 Gene3D - 437 535 IPR015300 -
Cpe05g01232 820 SMART B3_2 284 379 IPR003340 GO:0003677
Cpe05g01232 820 SMART B3_2 21 113 IPR003340 GO:0003677
Cpe05g01232 820 SMART B3_2 443 535 IPR003340 GO:0003677
Cpe05g01232 820 SMART B3_2 739 814 IPR003340 GO:0003677
Cpe05g01232 820 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Cpe05g01232 820 MobiDBLite consensus disorder prediction 216 244 - -
Cpe05g01232 820 CDD B3_DNA 737 795 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01232 Cpe-Chr5:8630927 Cpe16g00020 Cpe-Chr16:256262 2.21E-11 dispersed
Cpe10g00411 Cpe-Chr10:2410157 Cpe05g01232 Cpe-Chr5:8630927 1.94E-07 wgd
Cpe16g00215 Cpe-Chr16:4296222 Cpe05g01232 Cpe-Chr5:8630927 6.84E-62 wgd
Cpe19g00594 Cpe-Chr19:4924533 Cpe05g01232 Cpe-Chr5:8630927 5.73E-07 wgd
Cpe02g00152 Cpe-Chr2:782926 Cpe05g01232 Cpe-Chr5:8630927 9.19E-13 wgd
Cpe05g01232 Cpe-Chr5:8630927 Cpe06g00134 Cpe-Chr6:708192 4.79E-11 wgd
Cpe05g01232 Cpe-Chr5:8630927 Cpe07g00453 Cpe-Chr7:2899129 4.82E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49585 PF02362 B3 1.00E-11 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01232 - - cpep:111795114 828.935