Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g01232 | ATGACTGATTTTTCAGCTTTCCGAACGGGCTATCTCAAAAGGAAAATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCCTCCACTATCCAAGCTAGGAAATTGAGAATCCCGGAAAGTTTCCTCCGGATGATCAGGGATGATCTTTCTGCAGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGCTGATAATAAGTTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCGATAAGGGTCGGGTTTTTGTTAGTATTCAGATATGAGGGAAACTCATCATTCTGTATTTTTATCTTTAATCTTAATACATCTGAGATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGCCTTTGAACTCGGGTTTTTTACGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAATCCAAATATTTACCTACTCGAGATATCGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAGTCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCTCACAGAATTAAAAAAAGTGGAGGCAAGAAGCGGAAACTTGATTCTAGCGAGCATCGTCCGTCTGCTCATAGTGAAGATTTCGGTGACAATCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAACGAGTTGTCAACGGTGCAAAAGCGTTCGAGCCCGCTAATCCCTTCTGTAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCCGATGGGAGACAGTGGCCGGTCCGGTGTCTTTATAAAGTTGGTCGGGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTCAGGGTGAGAGAAATCGTTCTCAAAGTTACCATGTTTCGTGTCATTGAAGACGCTAGACGAATGACAGAGCGCGGGGTTTTGGGTACAAAGAATTCTCCCAGAAACCAATGGAAAGTGAATCAATGGTCTGCTAAAGTTTCCGTGGAGAATTCTGTAACAGCCATGGCCGAGTCAAACGAGCAACATGCGGCTCAATCGTTCGATGAACCCTCTCCAGCGAGGAAGGCTGGCCTGTTCTATAAGCTAGTAGTGCCGTCTATTCTTCAAGACAAGAAGCTGAAAATACCGAAAAAATTTGCGAAGAAGTTTGGAGATGATCTTTCTGATTTTGTTACTCTAGTTGTTCCTAATGGTTACCGATGGGTTCTGGAATTAAAAAGACATGGCCGTAGTTTGTGGTTTGAGGATGGCTGGCATGAATTTATCAGACACCATTGCATTCAAGTTGGGCAACTCTTGGTGTTCAGATTTGAAGGAAATTCCGTTTTCAACTTTTACATGTTCAACCTGACTTCTATTTCTAATGGTTCATGCATTACTTCAAATGCTTCCTGTGAACAAAGCCCAATTGCACTTGGAAAAGAAGCTGAATGTGAGAAATTAGTTGAACTATTTGGTTACAGTTCTCCGGACCCTTCGCATTCTTCGGCCAAGAAGGCTTTTTGTGAGTCTTCAGAGCAGCAGAAATTCCATGGAAGTTCCAATGAAGCTAGCACTTCTTCGGCCAAGAAGGCTTTTTGCGAGTCTTCAGAGCAGCAGAAATTCCATGGAAGTTCCAATGAAGCTAGCACTAAGAACTTTACGCATTGGTTTGACACACAGAACCTGCATCCTCCAAAGGATTTTGATTATACACTCAAAGGTTTAGATAAGTTGCAAGTTCTAAGGTCAAATGGAGATATTGGTATTCAGTTCAATGGAGATGGGCTCGCAAAAGCTAGAGAGAATCTTTCCTTTCAATTCTCTAATGAAATAGAAGAAGGAGCCAGGAAAAAGAAGTTAAAAGTTGAACCAATTGACTACTACAATGAGCCATTATTCGAAAAAAAATGTGGAAACATCCCACATAAAATTACTAGGATGGCTTTCGGAGTTGAGGAGTTCGCGTTTGGCAATCCTTTTTGCTGGATTGTTATGAGACATTCCTATGTACGCAGAGGATTCCATCTGCATATACCGTCCAAATTTTCTGAGAAGTATCTGAAAGGGATCTCAGGCGACATCACGCTTCAGGTTTCTAGTGGAAAGCAATGGCGTGTTCGATGTGTTCGTGAAGGAAAACGTGGAAGCCCAGCCGGAACAAATCCAGTGCATTACAATGCCAATATGTTTAAGTTTTTCTCAAAGACTGATGACAACGAGGTGCCTTGA | 2463 | 42.18 | MTDFSAFRTGYLKRKMPRPYFHKLVLSSTIQARKLRIPESFLRMIRDDLSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCIFIFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEAIPSNQPLNSGFLRNKLFGDEWNLHQSKSASTLQSKYLPTRDIGVQFSAVEVKKSADEVRFQNLGDDAHRIKKSGGKKRKLDSSEHRPSAHSEDFGDNRFRFYESASARKRTVTAEERERVVNGAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRVREIVLKVTMFRVIEDARRMTERGVLGTKNSPRNQWKVNQWSAKVSVENSVTAMAESNEQHAAQSFDEPSPARKAGLFYKLVVPSILQDKKLKIPKKFAKKFGDDLSDFVTLVVPNGYRWVLELKRHGRSLWFEDGWHEFIRHHCIQVGQLLVFRFEGNSVFNFYMFNLTSISNGSCITSNASCEQSPIALGKEAECEKLVELFGYSSPDPSHSSAKKAFCESSEQQKFHGSSNEASTSSAKKAFCESSEQQKFHGSSNEASTKNFTHWFDTQNLHPPKDFDYTLKGLDKLQVLRSNGDIGIQFNGDGLAKARENLSFQFSNEIEEGARKKKLKVEPIDYYNEPLFEKKCGNIPHKITRMAFGVEEFAFGNPFCWIVMRHSYVRRGFHLHIPSKFSEKYLKGISGDITLQVSSGKQWRVRCVREGKRGSPAGTNPVHYNANMFKFFSKTDDNEVP | 820 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8630927 | 8641843 | + | Cp4.1LG05g12230.1 | Cpe05g01232 | 470437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g01232 | 820 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 | 20 | 379 | - | - | |
Cpe05g01232 | 820 | CDD | B3_DNA | 442 | 533 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | PANTHER | B3 DOMAIN-CONTAINING | 20 | 379 | - | - | |
Cpe05g01232 | 820 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 | 438 | 793 | - | - | |
Cpe05g01232 | 820 | SUPERFAMILY | DNA-binding pseudobarrel domain | 442 | 533 | IPR015300 | - | |
Cpe05g01232 | 820 | SUPERFAMILY | DNA-binding pseudobarrel domain | 17 | 113 | IPR015300 | - | |
Cpe05g01232 | 820 | Pfam | B3 DNA binding domain | 287 | 377 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | Pfam | B3 DNA binding domain | 22 | 109 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | Pfam | B3 DNA binding domain | 448 | 529 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | Gene3D | - | 723 | 809 | IPR015300 | - | |
Cpe05g01232 | 820 | Gene3D | - | 261 | 381 | IPR015300 | - | |
Cpe05g01232 | 820 | ProSiteProfiles | B3 DNA-binding domain profile. | 442 | 535 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | CDD | B3_DNA | 282 | 377 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | SUPERFAMILY | DNA-binding pseudobarrel domain | 736 | 792 | IPR015300 | - | |
Cpe05g01232 | 820 | SUPERFAMILY | DNA-binding pseudobarrel domain | 279 | 380 | IPR015300 | - | |
Cpe05g01232 | 820 | CDD | B3_DNA | 19 | 111 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | ProSiteProfiles | B3 DNA-binding domain profile. | 284 | 379 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | PANTHER | B3 DOMAIN-CONTAINING | 438 | 793 | - | - | |
Cpe05g01232 | 820 | Gene3D | - | 13 | 114 | IPR015300 | - | |
Cpe05g01232 | 820 | Gene3D | - | 437 | 535 | IPR015300 | - | |
Cpe05g01232 | 820 | SMART | B3_2 | 284 | 379 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | SMART | B3_2 | 21 | 113 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | SMART | B3_2 | 443 | 535 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | SMART | B3_2 | 739 | 814 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | ProSiteProfiles | B3 DNA-binding domain profile. | 20 | 113 | IPR003340 | GO:0003677 | |
Cpe05g01232 | 820 | MobiDBLite | consensus disorder prediction | 216 | 244 | - | - | |
Cpe05g01232 | 820 | CDD | B3_DNA | 737 | 795 | IPR003340 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g01232 | Cpe-Chr5:8630927 | Cpe16g00020 | Cpe-Chr16:256262 | 2.21E-11 | dispersed | |
Cpe10g00411 | Cpe-Chr10:2410157 | Cpe05g01232 | Cpe-Chr5:8630927 | 1.94E-07 | wgd | |
Cpe16g00215 | Cpe-Chr16:4296222 | Cpe05g01232 | Cpe-Chr5:8630927 | 6.84E-62 | wgd | |
Cpe19g00594 | Cpe-Chr19:4924533 | Cpe05g01232 | Cpe-Chr5:8630927 | 5.73E-07 | wgd | |
Cpe02g00152 | Cpe-Chr2:782926 | Cpe05g01232 | Cpe-Chr5:8630927 | 9.19E-13 | wgd | |
Cpe05g01232 | Cpe-Chr5:8630927 | Cpe06g00134 | Cpe-Chr6:708192 | 4.79E-11 | wgd | |
Cpe05g01232 | Cpe-Chr5:8630927 | Cpe07g00453 | Cpe-Chr7:2899129 | 4.82E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49585 | PF02362 | B3 | 1.00E-11 | CL0405 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g01232 | - | - | cpep:111795114 | 828.935 |