Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01234 ATGGATGGGCTTCTGAAGAAGTTTTTTCACGAGAAGCCTTCTTCTTCGGTTGGTAATGAGGATTTTAACCCTGAATATTCTTTTGCAATTGAGTATACAGGTCCTGGAATCAATTACGACATTCCCCGTGCAGTTCCTATCAATATCGATTATATTCCAACTGCTTCTGTTGTTGTTTCATCGTCTCAGTTCAGGGATGATGTATCATCGCTTCCAGTTATACAACCCATCGTTGGTAAATTTAGTAGGAGCTCAAGTTTGAAAGCCAATTTAGTGATTTCTTCAACCTCTGAAATCCAGGAAGATGGGCCTGTTTGCCTTGATGCCAATAAGAAAGATAATGGGAAAGATAAATGTGATATCATTGAAAGTTCTGGTGAACTTGAGAATTTCAATAAGCTAAAGGGAAGATTAGAAGGCGGGTTAGAATCACTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTACACGAATTCGAGTGATTCAGAATCGGCAGAATCGGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGGGGAAGAGGAAGTTGAAAATGAAATCCAGCCTTGGCATGGCAGGAAGCCATCAGCTGTTACTTTTCTGGATCCCCATTCGAGCAGCAGCACGATTTCTGACGAGGCAGAATCGAGTCAATCTGATGCTGAAAGTATCCATGACATGCCAAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGAGTGTATTGTCTGTGGAGCCAAATATTGTATTGCTTGTGTAATTAGGGCAATGGGATCAATGCCAGAAGGAAGAAAGTGTATCACTTGTATTGGGTTCAGGATTGATGAATCAAGAAGAAACAACCTGGGTAAGTGCACTAAAGTGCTCAAGAGGCTGTTTACTGACTTGGAAGTTAAGAACACTCTGACTCGGGAAAAAGAGTGTGAAATAAATCAGATACCTGCAAGACTTGTTTATATCAATGACCATCCTTTAAGTCGACAGGAACTGCTTATGCTGCGAAGTTGCCAAAAGCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCGGGCTTCTGGGGAAAGGAAGGACGTGGACCGTGTCAGATAGTTAGCACCCATCTAGAGGTTGGAGGTCGCATTAAGAGGGATGCTAGCAATGGCAATACAAATGTTTGCATCAACAATCGAGAGATCACGAAAAAAGAGCTGCGGATATTGAAGCTGGCTGGAGTACCTTGTGAAGGAAGACCTTCTTATTGGGTTAGCGCAGATGGATCATATCAGGAAGAGGGAATGAACAATGGGGGGAAAATATGGGACAAGCCTACAACGAAGCTTGCATGTGCCGTTTTTAATTTACCTATTCCTTCTTGTTCTGTTCATTCTGGAGAGGAAAATGCCAAGCAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAGCCATTAAGTTCCTGATTCAAAGAAAATTGTATTGGTATATTAGTATACTCCTGGAAGGACGGGAACGTTTTGAAGAAGAAATTTTGATGGATGAGAAGAATAAGCAACCTGTGAATGATCCGTCTACCTCATCAGCATCAGGGAGTGACGTTCAGTTTGAGCGTAAAACCATCTATTCCTTTGGCCCTAAGCTGAAAGTGTTCGCCGACTGGCTTCTTCAAGTCGTAGTGTCAGGTTACTTCGAGACAACATTCCCAGCAGCTACCCGTGTGTACGCCCAATCAGTGGAAGAGTTGTTGAAGGACGAAGCGTTTCAAGCCACATACAGTAGAAGGAACGAACTAGAAATGCTCCCAAGAGTTTCAACTTATTTCCTTGATCGGGCTGTTGACATTTCAAGTGCAGACTATGACCCTTCTGACAACGACATCTTGTATGCCGAGGGAATCTCCTCATGTAAGAGCCTCAGTGACATGGAGTTCTCGTTCCCCGAGTCACGACAAGACTCCCTTCTCGATCCACCTTACCAGCATGACTCGTCAATAAGGTACCAGTTGATTCGAGTCCATCCCAGTACCCTGGGAGAGAACTGCAAACTGTTGGACATGTTTGAAGACATGAGCATTATCCTGTTTTGTGTTGCTCTGGTCGATTACGACGAATTTGACGAAGATGACAATGGAGTTTTAGTCAATCGGATGATCGCAAGCAAACAACTCTTCGAAAGGATCGTGACCGATCGAGCATTGAGTGGGAAGAACTTCCTTCTCATACTCAACAAGTTCGATCTCTTCGAAGAAAAAATCATCCAAGTTCCTCTTTCGAAATGCGAGTGGTTCGACGACTTCAATCCAATGATCACGCCAAATTCTACCGGAAGAAGCAGCAGCAGCAGCAGCAGCAGCACAAACCCGTCGTTAGCTCAACGAGCGTTTCAGTACATAGCGGTGAAATTCAAGAGATTGTTCTATTCTCTAACAGACAAAAAGCTGTTTGTTTCACAAACTACAGGGATGGAACCTGAAAATGTGAATGCAGCTCTCAGATATGCGAGGGAGATAATCAAATGGGAAGTAGACAAGCCTAACATCAGCATTACTGAAATTTCAAGTGCCAGTGCTGATGCAAGCAGCTTTTTATAG 2622 43.1 MDGLLKKFFHEKPSSSVGNEDFNPEYSFAIEYTGPGINYDIPRAVPINIDYIPTASVVVSSSQFRDDVSSLPVIQPIVGKFSRSSSLKANLVISSTSEIQEDGPVCLDANKKDNGKDKCDIIESSGELENFNKLKGRLEGGLESLEIKNEEDFQGYTNSSDSESAESGLSSSSGIFAVRGEEEVENEIQPWHGRKPSAVTFLDPHSSSSTISDEAESSQSDAESIHDMPRAERKGKKGSCYYCLKGNRFTEKEECIVCGAKYCIACVIRAMGSMPEGRKCITCIGFRIDESRRNNLGKCTKVLKRLFTDLEVKNTLTREKECEINQIPARLVYINDHPLSRQELLMLRSCQKPPKNLKPGRYWYDKESGFWGKEGRGPCQIVSTHLEVGGRIKRDASNGNTNVCINNREITKKELRILKLAGVPCEGRPSYWVSADGSYQEEGMNNGGKIWDKPTTKLACAVFNLPIPSCSVHSGEENAKQIYKVPFSDDERQAIKFLIQRKLYWYISILLEGRERFEEEILMDEKNKQPVNDPSTSSASGSDVQFERKTIYSFGPKLKVFADWLLQVVVSGYFETTFPAATRVYAQSVEELLKDEAFQATYSRRNELEMLPRVSTYFLDRAVDISSADYDPSDNDILYAEGISSCKSLSDMEFSFPESRQDSLLDPPYQHDSSIRYQLIRVHPSTLGENCKLLDMFEDMSIILFCVALVDYDEFDEDDNGVLVNRMIASKQLFERIVTDRALSGKNFLLILNKFDLFEEKIIQVPLSKCEWFDDFNPMITPNSTGRSSSSSSSSTNPSLAQRAFQYIAVKFKRLFYSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWEVDKPNISITEISSASADASSFL 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8646536 8651675 - Cp4.1LG05g12280.1 Cpe05g01234 470439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01234 873 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 476 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe05g01234 873 MobiDBLite consensus disorder prediction 153 172 - -
Cpe05g01234 873 MobiDBLite consensus disorder prediction 185 230 - -
Cpe05g01234 873 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 476 - -
Cpe05g01234 873 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 478 871 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe05g01234 873 Gene3D - 488 641 IPR011025 GO:0007165
Cpe05g01234 873 Pfam G-protein alpha subunit 479 848 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe05g01234 873 SUPERFAMILY Transducin (alpha subunit), insertion domain 487 640 IPR011025 GO:0007165
Cpe05g01234 873 MobiDBLite consensus disorder prediction 201 218 - -
Cpe05g01234 873 ProSiteProfiles G-alpha domain profile. 458 860 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe05g01234 873 Gene3D - 649 854 IPR027417 -
Cpe05g01234 873 SMART galpha_1 474 857 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cpe05g01234 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 850 IPR027417 -
Cpe05g01234 873 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 478 871 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01234 - - - mcha:111017232 1379.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01234 Cpe-Chr5:8646536 Cpe14g00990 Cpe-Chr14:8357647 0 dispersed
Cpe10g00410 Cpe-Chr10:2406349 Cpe05g01234 Cpe-Chr5:8646536 1.03E-09 wgd
Cpe16g00217 Cpe-Chr16:4337933 Cpe05g01234 Cpe-Chr5:8646536 0 wgd
Cpe19g00593 Cpe-Chr19:4919661 Cpe05g01234 Cpe-Chr5:8646536 2.53E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01234 Cpe_Chr05 FPKM 7.900725 8.51195 20.786505 19.716436 23.852018 14.84901 22.398726 39.874733 37.31348 45.601479