Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01240 ATCGGAAGAACTCCTATTAGTCGTTGTCCTTTCAGTCTCTTGGCCGGATTTTCCAACGATCTCGCTGGAGGGAAACGTTCTCCGGCGTTTCCCGATTCTCCGGATCCGATTTATTCATCGAATCTCTTTGTAATTTCTTTGTTCAATTTCTCAATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGAGAATCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGATTCCTAAAAGTTCTGCGACTAAGGTTATTACGAAGGAATGTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGATATGTTATCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAGACATCATTTGTTTGCTACATCTGGTGTTACTATGATTGAGAATCAAAGTATTAGCTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTTCATGGCAATGATGCAACTAGAGTTGACTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATTAGATGCATGGCTCATAAATGTAATGCTATTTGCGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATTGAGGATAACAAGAGAGTCAAATGGTGTCCGAGTACCCCTCACTGTGGTAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAATTTTGTTTCAGTTGCTTATCAGAGGCTCACTCACCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGTCGAGATGAATCTGAAACAGTTAACTGGATGACAGTACATACGAAACCCTGTCCAAAGTGCCACAAACCTGTCGAGAAGAATGGTGGCTGTAACCTTGTCAGTTGCATCTGTGGACAAGCATTTTGTTGGTTGTGTGGTGGAGCTACCGGTCGAGAACACACGTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGCACAAAAAGCTGAAAGAGCAAAACGGGACTTGTATCGCTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTGTAAGCTGGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATTTCGATATCTGAAGAGAGGGAATCCATGCTGAGAGATTTTAGTTGGGTAAACAATGGACTTCATAGGCTTTTCAGATCAAGGCGGGTTTTATCATATTCTTACCCATTTGCATTCTATATGTTCGGGGACGAGCTATTCAAAGACGAGATGACCGAGGAGGAAAGGGAAATAAAGCAACATCTATTTGAGGACCAACAACAACAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACGCCAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCCGTTATCACCGATACCCTTTGCAAGAAGATGTATGACTGTATTGAAAATGATCTTCTGGGTTCTCTTGAACTGGGTATACACAATATCGCTCCGTACAAGTCGAAAGGAATCGAGAAAGCACTGGAACTTTCGGCTTGTTGGAACAGCAAAACGAATACTACTATTGATAAATATCTTCCATCAGACTGTAGTACAAGTGGAGGATTGTCGGAACGCGATCGTTTGTCTGGATTGAACTCCGACGAGAACGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGACGTTGTTACTGGTAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGACAGAAACTAA 1926 42.37 IGRTPISRCPFSLLAGFSNDLAGGKRSPAFPDSPDPIYSSNLFVISLFNFSMEDCISSDEDYYDSDRESLHGLENEDSEIQWIPKSSATKVITKECLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRHHLFATSGVTMIENQSISSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESAQKAERAKRDLYRYMHYHNRYKAHTDSCKLESKLKESIQEKISISEERESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYAKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKTNTTIDKYLPSDCSTSGGLSERDRLSGLNSDENGCSSRKRARADVVTGNFFDLNLPAEVVDRN 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8679852 8684236 + Cp4.1LG05g12390.1 Cpe05g01240 470445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01240 641 ProSiteProfiles Zinc finger RING-type profile. 170 218 IPR001841 -
Cpe05g01240 641 MobiDBLite consensus disorder prediction 591 612 - -
Cpe05g01240 641 SUPERFAMILY RING/U-box 311 377 - -
Cpe05g01240 641 MobiDBLite consensus disorder prediction 591 614 - -
Cpe05g01240 641 SMART ibrneu5 311 376 IPR002867 -
Cpe05g01240 641 SMART ibrneu5 241 303 IPR002867 -
Cpe05g01240 641 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 56 567 IPR031127 GO:0004842|GO:0016567
Cpe05g01240 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 255 IPR013083 -
Cpe05g01240 641 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 56 567 - -
Cpe05g01240 641 SUPERFAMILY RING/U-box 242 310 - -
Cpe05g01240 641 Gene3D - 299 547 - -
Cpe05g01240 641 Pfam Ariadne domain 380 641 IPR045840 -
Cpe05g01240 641 SUPERFAMILY RING/U-box 165 253 - -
Cpe05g01240 641 Pfam IBR domain, a half RING-finger domain 242 303 IPR002867 -
Cpe05g01240 641 ProSiteProfiles TRIAD supradomain profile. 166 380 IPR044066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01240 Cpe-Chr5:8679852 Cpe07g00830 Cpe-Chr7:7499261 1.28E-54 dispersed
Cpe16g00224 Cpe-Chr16:4384069 Cpe05g01240 Cpe-Chr5:8679852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01240 K11968 - csv:101205066 1142.1