Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g01240 | ATCGGAAGAACTCCTATTAGTCGTTGTCCTTTCAGTCTCTTGGCCGGATTTTCCAACGATCTCGCTGGAGGGAAACGTTCTCCGGCGTTTCCCGATTCTCCGGATCCGATTTATTCATCGAATCTCTTTGTAATTTCTTTGTTCAATTTCTCAATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGAGAATCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGATTCCTAAAAGTTCTGCGACTAAGGTTATTACGAAGGAATGTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGATATGTTATCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAGACATCATTTGTTTGCTACATCTGGTGTTACTATGATTGAGAATCAAAGTATTAGCTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTTCATGGCAATGATGCAACTAGAGTTGACTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATTAGATGCATGGCTCATAAATGTAATGCTATTTGCGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATTGAGGATAACAAGAGAGTCAAATGGTGTCCGAGTACCCCTCACTGTGGTAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAATTTTGTTTCAGTTGCTTATCAGAGGCTCACTCACCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGTCGAGATGAATCTGAAACAGTTAACTGGATGACAGTACATACGAAACCCTGTCCAAAGTGCCACAAACCTGTCGAGAAGAATGGTGGCTGTAACCTTGTCAGTTGCATCTGTGGACAAGCATTTTGTTGGTTGTGTGGTGGAGCTACCGGTCGAGAACACACGTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGCACAAAAAGCTGAAAGAGCAAAACGGGACTTGTATCGCTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTGTAAGCTGGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATTTCGATATCTGAAGAGAGGGAATCCATGCTGAGAGATTTTAGTTGGGTAAACAATGGACTTCATAGGCTTTTCAGATCAAGGCGGGTTTTATCATATTCTTACCCATTTGCATTCTATATGTTCGGGGACGAGCTATTCAAAGACGAGATGACCGAGGAGGAAAGGGAAATAAAGCAACATCTATTTGAGGACCAACAACAACAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACGCCAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCCGTTATCACCGATACCCTTTGCAAGAAGATGTATGACTGTATTGAAAATGATCTTCTGGGTTCTCTTGAACTGGGTATACACAATATCGCTCCGTACAAGTCGAAAGGAATCGAGAAAGCACTGGAACTTTCGGCTTGTTGGAACAGCAAAACGAATACTACTATTGATAAATATCTTCCATCAGACTGTAGTACAAGTGGAGGATTGTCGGAACGCGATCGTTTGTCTGGATTGAACTCCGACGAGAACGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGACGTTGTTACTGGTAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGACAGAAACTAA | 1926 | 42.37 | IGRTPISRCPFSLLAGFSNDLAGGKRSPAFPDSPDPIYSSNLFVISLFNFSMEDCISSDEDYYDSDRESLHGLENEDSEIQWIPKSSATKVITKECLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRHHLFATSGVTMIENQSISSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESAQKAERAKRDLYRYMHYHNRYKAHTDSCKLESKLKESIQEKISISEERESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYAKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKTNTTIDKYLPSDCSTSGGLSERDRLSGLNSDENGCSSRKRARADVVTGNFFDLNLPAEVVDRN | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8679852 | 8684236 | + | Cp4.1LG05g12390.1 | Cpe05g01240 | 470445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g01240 | 641 | ProSiteProfiles | Zinc finger RING-type profile. | 170 | 218 | IPR001841 | - | |
Cpe05g01240 | 641 | MobiDBLite | consensus disorder prediction | 591 | 612 | - | - | |
Cpe05g01240 | 641 | SUPERFAMILY | RING/U-box | 311 | 377 | - | - | |
Cpe05g01240 | 641 | MobiDBLite | consensus disorder prediction | 591 | 614 | - | - | |
Cpe05g01240 | 641 | SMART | ibrneu5 | 311 | 376 | IPR002867 | - | |
Cpe05g01240 | 641 | SMART | ibrneu5 | 241 | 303 | IPR002867 | - | |
Cpe05g01240 | 641 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 56 | 567 | IPR031127 | GO:0004842|GO:0016567 | |
Cpe05g01240 | 641 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 255 | IPR013083 | - | |
Cpe05g01240 | 641 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 56 | 567 | - | - | |
Cpe05g01240 | 641 | SUPERFAMILY | RING/U-box | 242 | 310 | - | - | |
Cpe05g01240 | 641 | Gene3D | - | 299 | 547 | - | - | |
Cpe05g01240 | 641 | Pfam | Ariadne domain | 380 | 641 | IPR045840 | - | |
Cpe05g01240 | 641 | SUPERFAMILY | RING/U-box | 165 | 253 | - | - | |
Cpe05g01240 | 641 | Pfam | IBR domain, a half RING-finger domain | 242 | 303 | IPR002867 | - | |
Cpe05g01240 | 641 | ProSiteProfiles | TRIAD supradomain profile. | 166 | 380 | IPR044066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g01240 | Cpe-Chr5:8679852 | Cpe07g00830 | Cpe-Chr7:7499261 | 1.28E-54 | dispersed | |
Cpe16g00224 | Cpe-Chr16:4384069 | Cpe05g01240 | Cpe-Chr5:8679852 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g01240 | K11968 | - | csv:101205066 | 1142.1 |