Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01240 ATCGGAAGAACTCCTATTAGTCGTTGTCCTTTCAGTCTCTTGGCCGGATTTTCCAACGATCTCGCTGGAGGGAAACGTTCTCCGGCGTTTCCCGATTCTCCGGATCCGATTTATTCATCGAATCTCTTTGTAATTTCTTTGTTCAATTTCTCAATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGAGAATCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGATTCCTAAAAGTTCTGCGACTAAGGTTATTACGAAGGAATGTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGATATGTTATCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAGACATCATTTGTTTGCTACATCTGGTGTTACTATGATTGAGAATCAAAGTATTAGCTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTTCATGGCAATGATGCAACTAGAGTTGACTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATTAGATGCATGGCTCATAAATGTAATGCTATTTGCGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATTGAGGATAACAAGAGAGTCAAATGGTGTCCGAGTACCCCTCACTGTGGTAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAATTTTGTTTCAGTTGCTTATCAGAGGCTCACTCACCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGTCGAGATGAATCTGAAACAGTTAACTGGATGACAGTACATACGAAACCCTGTCCAAAGTGCCACAAACCTGTCGAGAAGAATGGTGGCTGTAACCTTGTCAGTTGCATCTGTGGACAAGCATTTTGTTGGTTGTGTGGTGGAGCTACCGGTCGAGAACACACGTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGCACAAAAAGCTGAAAGAGCAAAACGGGACTTGTATCGCTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTGTAAGCTGGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATTTCGATATCTGAAGAGAGGGAATCCATGCTGAGAGATTTTAGTTGGGTAAACAATGGACTTCATAGGCTTTTCAGATCAAGGCGGGTTTTATCATATTCTTACCCATTTGCATTCTATATGTTCGGGGACGAGCTATTCAAAGACGAGATGACCGAGGAGGAAAGGGAAATAAAGCAACATCTATTTGAGGACCAACAACAACAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACGCCAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCCGTTATCACCGATACCCTTTGCAAGAAGATGTATGACTGTATTGAAAATGATCTTCTGGGTTCTCTTGAACTGGGTATACACAATATCGCTCCGTACAAGTCGAAAGGAATCGAGAAAGCACTGGAACTTTCGGCTTGTTGGAACAGCAAAACGAATACTACTATTGATAAATATCTTCCATCAGACTGTAGTACAAGTGGAGGATTGTCGGAACGCGATCGTTTGTCTGGATTGAACTCCGACGAGAACGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGACGTTGTTACTGGTAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGACAGAAACTAA 1926 42.37 IGRTPISRCPFSLLAGFSNDLAGGKRSPAFPDSPDPIYSSNLFVISLFNFSMEDCISSDEDYYDSDRESLHGLENEDSEIQWIPKSSATKVITKECLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRHHLFATSGVTMIENQSISSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESAQKAERAKRDLYRYMHYHNRYKAHTDSCKLESKLKESIQEKISISEERESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYAKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKTNTTIDKYLPSDCSTSGGLSERDRLSGLNSDENGCSSRKRARADVVTGNFFDLNLPAEVVDRN 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8679852 8684236 + Cp4.1LG05g12390.1 Cpe05g01240 470445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01240 641 ProSiteProfiles Zinc finger RING-type profile. 170 218 IPR001841 -
Cpe05g01240 641 MobiDBLite consensus disorder prediction 591 612 - -
Cpe05g01240 641 SUPERFAMILY RING/U-box 311 377 - -
Cpe05g01240 641 MobiDBLite consensus disorder prediction 591 614 - -
Cpe05g01240 641 SMART ibrneu5 311 376 IPR002867 -
Cpe05g01240 641 SMART ibrneu5 241 303 IPR002867 -
Cpe05g01240 641 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 56 567 IPR031127 GO:0004842|GO:0016567
Cpe05g01240 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 255 IPR013083 -
Cpe05g01240 641 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 56 567 - -
Cpe05g01240 641 SUPERFAMILY RING/U-box 242 310 - -
Cpe05g01240 641 Gene3D - 299 547 - -
Cpe05g01240 641 Pfam Ariadne domain 380 641 IPR045840 -
Cpe05g01240 641 SUPERFAMILY RING/U-box 165 253 - -
Cpe05g01240 641 Pfam IBR domain, a half RING-finger domain 242 303 IPR002867 -
Cpe05g01240 641 ProSiteProfiles TRIAD supradomain profile. 166 380 IPR044066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01240 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1142.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01240 Cpe-Chr5:8679852 Cpe07g00830 Cpe-Chr7:7499261 1.28E-54 dispersed
Cpe16g00224 Cpe-Chr16:4384069 Cpe05g01240 Cpe-Chr5:8679852 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01240 . 215 641 ARIADNE family AT4G34370 71.3 2.3e-182 635.6
Cpe16g00224 . 164 589 ARIADNE family AT4G34370 71.8 3.3e-181 631.7
Cpe05g01240 . 109 578 ARIADNE family AT2G16090 78.4 1.6e-224 775.8
Cpe16g00224 . 58 542 ARIADNE family AT2G16090 76.8 6.8e-223 770.4
Cpe16g00224 . 38 543 ARIADNE family AT3G27710 61.8 9.0e-184 640.6
Cpe05g01240 . 87 573 ARIADNE family AT3G27710 62.4 5.8e-183 637.9
Cpe05g01240 . 98 573 ARIADNE family AT3G27720 54.4 6.4e-144 508.1
Cpe16g00224 . 44 522 ARIADNE family AT3G27720 53.6 6.0e-142 501.5
Cpe07g00830 . 26 565 ARIADNE family AT1G05890 62.9 3.1e-217 751.9
Cpe17g01099 CST 56 563 ARIADNE family AT1G05890 68.1 3.3e-211 731.9
Cpe12g00507 CST 117 540 ARIADNE family AT1G05890 60.2 1.2e-160 563.9
Cpe07g00830 . 26 620 ARIADNE family AT1G65430 71.5 7.6e-258 886.7
Cpe17g01099 CST 16 622 ARIADNE family AT1G65430 65.4 7.9e-239 823.5
Cpe12g00507 CST 72 595 ARIADNE family AT1G65430 57.8 3.9e-185 645.2
Cpe07g00830 . 24 461 ARIADNE family AT2G31780 55.3 2.9e-148 522.3
Cpe17g01099 CST 53 488 ARIADNE family AT2G31780 53.3 3.9e-140 495.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01240 Cpe_Chr05 FPKM 17.033262 17.568138 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0