Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01249 ATGGTGAAGCTCGAGAACGCAGCAACATTCCCACAAGCTTTGCTCGCCATGGCAGTAGCTTCAGCTTTTACTGCATCTCTCAGTTTCTCTGTCTCTTCGCACAATAGAGCATCATCCGTTCCTCAGCTTTCTCGCCGAAATTCACGCAGGTCGATAGTTTCTGCCATCCCGAGACCGTATGGAGACTCTTCAACAATTGGATTTTCGAGGAAAACAGTTGGGGCACCTTTAAACCTTGACGAAGATTTTCTTCACACCAGTACAAGTTATGGACCTATAATGGCCAAGAAAGGCAATCCACCAATTATGCCTGCAGTGATGACACCAGGAGGGCCTTTGAATCTCTCTTCTGTGTTATTTAGGAATCGTATCATATTTATTGGTCAACCCATCAACTCTGCCGTTGCACAGCGAGTTATATCACAGCTTGTGACACTAGCAACCATTGATGAGGAGTCGGATATCCTGGTATATCTGAATTGCCCTGGTGGAAGTACGTACTCAATATTAGCAATTTATGATTGCATGTCTTGGATAAAGCCTAAGGTTGGCACAGTGTGCTTCGGAGTTGCTGCAAGCCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATACATCAGCCACAAAGTGGATGTGGGGGTCATGTGGAAGATGTTAGACGCCAAGTCAATGAAGCAGTTCAATCACGCCATAAAGTTGACATGATGTATGCTGCATTTACCGGCCAACCATTAGAGAAAGTACAACAATACACGGAGAGGGATCGATTTTTGTCTGTTTCTGAGATATCTATTCCGATCAAAATGGCATCCCCCAAATTCATCATAATCACGTAA 873 44.67 MVKLENAATFPQALLAMAVASAFTASLSFSVSSHNRASSVPQLSRRNSRRSIVSAIPRPYGDSSTIGFSRKTVGAPLNLDEDFLHTSTSYGPIMAKKGNPPIMPAVMTPGGPLNLSSVLFRNRIIFIGQPINSAVAQRVISQLVTLATIDEESDILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKVDMMYAAFTGQPLEKVQQYTERDRFLSVSEISIPIKMASPKFIIIT 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8747306 8754292 + Cp4.1LG05g12410.1 Cpe05g01249 470454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01249 290 ProSitePatterns Endopeptidase Clp histidine active site. 207 220 IPR033135 -
Cpe05g01249 290 SUPERFAMILY ClpP/crotonase 113 274 IPR029045 -
Cpe05g01249 290 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 27 274 IPR023562 -
Cpe05g01249 290 CDD S14_ClpP_2 114 274 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cpe05g01249 290 Gene3D - 101 276 - -
Cpe05g01249 290 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 27 274 - -
Cpe05g01249 290 Pfam Clp protease 115 274 IPR023562 -
Cpe05g01249 290 PRINTS Clp protease catalytic subunit P signature 263 282 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cpe05g01249 290 PRINTS Clp protease catalytic subunit P signature 206 225 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cpe05g01249 290 PRINTS Clp protease catalytic subunit P signature 114 129 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cpe05g01249 290 PRINTS Clp protease catalytic subunit P signature 185 202 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cpe05g01249 290 PRINTS Clp protease catalytic subunit P signature 154 174 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01249 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101213940 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01249 Cpe-Chr5:8747306 Cpe08g00903 Cpe-Chr8:7119804 5.90E-41 dispersed
Cpe05g01249 Cpe-Chr5:8747306 Cpe02g01526 Cpe-Chr2:12997139 4.06E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01249 Cpe_Chr05 FPKM 1.987665 2.819642 3.807687 3.819644 6.814712 5.988287 6.739904 0.818088 0.548929 0.688746