Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01257 ATGGCTTCCTCGTCTGTTGAGTACCGTTGCTTCGTGGGTGGCCTTGCGTGGGCCACTGATAATCATGCCTTAGAGAAGGCTTTCTCTTCCTTTGGCGAGATCGTGGAAGCGAAGATCGTCAACGACCGTGAAACCGGAAGATCGAGGGGATTTGGATTCGTGACTTTTGGTCTGATCCGATTGACGACAGGTGGATACGGAGGTGGTGGTTACGGCGGAGGACGTGACCGTGGATACGGCGGCGGTGGTGGTGATGGTGGCCGCTACCAGAGAGGAGGTGGCGGCGGCGGTGGATCTGAAGGAGGTTTTGGTCTGATCCGATTGACGACA 330 56.67 MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFGLIRLTTGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGSEGGFGLIRLTT 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8798566 8802856 + Cp4.1LG05g12570.1 Cpe05g01257 470462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01257 110 SMART rrm1_1 9 76 IPR000504 GO:0003723
Cpe05g01257 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 56 IPR000504 GO:0003723
Cpe05g01257 110 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 57 - -
Cpe05g01257 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 56 IPR000504 GO:0003723
Cpe05g01257 110 SUPERFAMILY RNA-binding domain, RBD 8 56 IPR035979 GO:0003676
Cpe05g01257 110 PANTHER GEO13361P1-RELATED 1 57 - -
Cpe05g01257 110 Gene3D - 7 57 IPR012677 -
Cpe05g01257 110 MobiDBLite consensus disorder prediction 77 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01257 - - K13195 cmax:111499534 116.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01257 Cpe-Chr5:8798566 Cpe15g00247 Cpe-Chr15:2284752 4.65E-18 dispersed
Cpe16g00240 Cpe-Chr16:4473861 Cpe05g01257 Cpe-Chr5:8798566 5.32E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01257 Cpe_Chr05 FPKM 53.188629 47.926876 30.025549 31.294239 80.085251 96.470177 83.323204 37.115555 41.710728 35.453266