Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01262 ATGCTGTTGAAGTCGGAGATGACAATGTCGGAAAAACAGAGGACTCCAGTCAAATGGCGGCGAAGCCACGGTGACTGCCACAGCTTGTCGCCCGTCTCGAATCAAGCGAGCCGGGTCAATGATTTTCAGGATCTGCTTGCACCTGGAGGTTGGCCTGAGTTGACCAAGTACGAGTTCTCCTCCACCGTGACGTGTTCGCCACCGCCGGAGGCGAACTCCGTGGCGGTCGGAGAGTTTCCGAAGAAGAGAAAGGCCAACAAGAACAAGGAACTGAAATCCAAACTGGGTAATGCTGAATCTGACAAAAGAATCAAACCAAATATTGAAGAAGAAGAAGAAACAGAGAAAACAGAGGAAACAGAGGAAACAGAGACGTCGAAACAGAGTTCAAGAGCTTCTGATTGCGTTCATGTAAGAGCCCGTCCAGGCCAAGCTACAGATAGCCATAGCCTCGCAGAACGAGCGAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTACCTGGGTGTAACAAAATTGCAGGAAAAGCTGGAATGCTGGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTATCCATTAAGCTGGCCACTACGAATCCGACACTCGATTTCATCAATGTGGATGACCCTTTGTGTAAACAGGTGTTTCCGGCGACGGAAATCTCGCCGGAAACGGTTACTTCTTCATCGTACTTTAATAATCAGCTTGGAATCAGCTCAAGTTNCATTTGGAGCTCTGTTCAACTTGGGGAGACGACTTACAAAGGGTTTGCAGTATGA 810 46.79 MLLKSEMTMSEKQRTPVKWRRSHGDCHSLSPVSNQASRVNDFQDLLAPGGWPELTKYEFSSTVTCSPPPEANSVAVGEFPKKRKANKNKELKSKLGNAESDKRIKPNIEEEEETEKTEETEETETSKQSSRASDCVHVRARPGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSIKLATTNPTLDFINVDDPLCKQVFPATEISPETVTSSSYFNNQLGISSSXIWSSVQLGETTYKGFAV 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8818978 8820879 + Cp4.1LG05g12530.1 Cpe05g01262 470467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01262 269 Coils Coil 81 101 - -
Cpe05g01262 269 Pfam Helix-loop-helix DNA-binding domain 148 195 IPR011598 GO:0046983
Cpe05g01262 269 MobiDBLite consensus disorder prediction 80 111 - -
Cpe05g01262 269 Gene3D - 143 212 IPR036638 GO:0046983
Cpe05g01262 269 SMART finulus 150 200 IPR011598 GO:0046983
Cpe05g01262 269 CDD bHLH_AtBPE_like 134 219 - -
Cpe05g01262 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 240 IPR024097 GO:0006355
Cpe05g01262 269 MobiDBLite consensus disorder prediction 64 157 - -
Cpe05g01262 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 194 IPR011598 GO:0046983
Cpe05g01262 269 PANTHER TRANSCRIPTION FACTOR BHLH63 76 240 - -
Cpe05g01262 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 212 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01262 - - - cpep:111795128 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01262 Cpe-Chr5:8818978 Cpe12g01104 Cpe-Chr12:9140287 1.67E-44 dispersed
Cpe15g00549 Cpe-Chr15:6338973 Cpe05g01262 Cpe-Chr5:8818978 2.91E-46 wgd
Cpe16g00243 Cpe-Chr16:4493168 Cpe05g01262 Cpe-Chr5:8818978 1.54E-55 wgd
Cpe04g00116 Cpe-Chr4:1039875 Cpe05g01262 Cpe-Chr5:8818978 1.64E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g377 Blo02g00804 Blo15g00700 . Bda08g00933 Bpe07g00427 . Bma05g00457 Bma12g00509 . . . Cma20g00847 Car02g00257 . Sed05g2313 . . Bhi05g01240 Tan02g0787 Cmetu01g0279 . Hepe02g0492 . . . . . . . . . Cone12ag1155 Cone8ag1204 Cone3ag1165 . . . Chy11g00377 . . . . . . . . . . Cmo02g00400 Cmo20g00857 . . . . . Cpe05g01262 Bhi10g02007 Tan05g1302 Cmetu11g0539 . . . . . . . . . . . . Csa02g01259 . Cme11g00114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012104 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49586 PF00010 HLH 1.90E-06 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01262 Cpe_Chr05 FPKM 6.65658 7.226488 12.677816 13.169449 18.132441 14.389474 18.772524 20.267265 18.99733 19.331871