Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01264 ATGGCGCAAAAGCTCAAGGTTCTCATCATCGGAGGAACTGGTTACATCGGAAAGTTTATAGTAGAAGCCAGCGCCAAAGCAGGTCATCCAACTTATGCATTGGTTCGGGAATCCACGCTTGCTGACTCCGCCAAGTCTTCGATTATCGATAATTTCAGGAGCTTGGGAGTCAATTTCCTCTTCAAATTGGAGCAGGGCGATATCTTCGACAATGAGAGTCTGGTTAAGGCAATAAAGCAAGTTGATGTGGTGATATCCACCGTTGGTCGGACTCTGTTAGCCAATCAAGATAAGATCATATCTGCTATCAAACAAGCTGGTAATGTGAAGAGATTCTTACCCTCAGAATTTGGCAACGATGTGGATCGTGTCCACGCAGTGGAGCCGGCAAAATCAATGTTTGCTGCTAAGGCTGAAATTCGTAGGGCTATTGAAGCAGAGGGAATCCCCCATACGTTTGTTGTATGCAATTTCTTCGATGGTTACTTTCTTCGCAACTTTTGTCAGCCAGGAGCCACCGATCCACCTAGAGACAGAGTCAAAATCATTGGGGATGGAAGTCCCAAAGTGATTTACAACAAGGAAGAAGACATTGGCACGTACACCATCCGAGCCATCGAGGATCCAAGAACGCTCAATAAGATCTTGTACATTAGGCCTCCTGCCAACATCTACTCGACTAACGAGCTAGTCTCGCTGTGGGAGAAAAAAATTGGCACGACTCTTGAACGGATCTACATTCCTGAAGAGGAGCTATTGAAGAACATACAAGAGGCTCCATTTCCACTTAACACAGTATTGGCTATTAGTCATACTGCATTTGTGAAGGGAGATCATACCAACTTTGAGATTGAACCATCATTTGGAGTGGAAGCTTCAGAGCTATACTCAGATGTTAAATACACAACTGTGGAAGAATACCTCGACCAGTTTGTTTAG 939 44.52 MAQKLKVLIIGGTGYIGKFIVEASAKAGHPTYALVRESTLADSAKSSIIDNFRSLGVNFLFKLEQGDIFDNESLVKAIKQVDVVISTVGRTLLANQDKIISAIKQAGNVKRFLPSEFGNDVDRVHAVEPAKSMFAAKAEIRRAIEAEGIPHTFVVCNFFDGYFLRNFCQPGATDPPRDRVKIIGDGSPKVIYNKEEDIGTYTIRAIEDPRTLNKILYIRPPANIYSTNELVSLWEKKIGTTLERIYIPEEELLKNIQEAPFPLNTVLAISHTAFVKGDHTNFEIEPSFGVEASELYSDVKYTTVEEYLDQFV 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8827948 8831120 + Cp4.1LG05g12510.1 Cpe05g01264 470469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01264 312 Pfam NmrA-like family 7 302 IPR008030 -
Cpe05g01264 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 279 IPR036291 -
Cpe05g01264 312 CDD PCBER_SDR_a 6 307 IPR045312 GO:0016491
Cpe05g01264 312 Gene3D - 158 308 - -
Cpe05g01264 312 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 1 312 - -
Cpe05g01264 312 PANTHER PINORESINOL REDUCTASE-RELATED 1 312 - -
Cpe05g01264 312 Gene3D - 6 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01264 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101210299 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01264 Cpe-Chr5:8827948 Cpe16g00246 Cpe-Chr16:4505107 3.50E-179 dispersed
Cpe15g00426 Cpe-Chr15:5388699 Cpe05g01264 Cpe-Chr5:8827948 2.48E-127 transposed
Cpe15g00550 Cpe-Chr15:6345602 Cpe05g01264 Cpe-Chr5:8827948 2.84E-99 wgd
Cpe16g00245 Cpe-Chr16:4500867 Cpe05g01264 Cpe-Chr5:8827948 6.87E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g371 . . . . . . Bma05g00447 . . . . . . . Sed11g1039 . . Bhi05g01241 Tan02g1978 Cmetu01g0347 . . . . . . . . . . . . . . . Lsi10g00376 . . . . . . . . . . . . . . . . . . . Cpe05g01264 Bhi10g01998 Tan05g1296 . . . . . . . . . . . . . Csa02g01265 . Cme11g00121
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01264 Cpe_Chr05 FPKM 1.115152 0.0 0.0 0.0 0.783337 0.0 0.0 0.0 0.0 0.325759