Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01272 ATGGCTGGTGATCCTTTGACAAGCTCTGATGGCAATGCACAACCTGATCCGCGGAGGACGTATCAGGTTGTTGTGGCGGCTACTGAAAATATGGGTATTGGTAAGGATGGGCAACTACCATGGACGTTGCCGTCTGATCTCAAGTTTTTTAGAAACATAACCACGACAACATCGGATCCAGGGAAAAGGAATGCAATTCTAATGGGTCGAAGAACATGGGAGGGTATTCCTCCTGAGCGCCGACCACTACCTGGTCGTCTCAATGTTGTTCTGACTCGCTCGGGGAGTTTTGACATTGCCACTGTTGAAAATGTCATAATATGTGGTAGTATAACGTCTGCTTTGGAGCTATTAGCAGCTTCTCCGTACTGTTTGTCAATAGAGAAAGTGTTCGTTATAGGTGGTGGCGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGAGGCAAATGTCGACTGTGATACCTTCATTCCAGCTATTGATAAGTCTATGTTTCAGCCATGGTACTCGTCGTTTCCTGTGGTGGAAAATAACTTTCGATATTCTTTCACTAGTTATGTTCGTGTGAGGAGCTCGATTGAACCACCTATTGATCAAAACAATGGCCCGACCGGTAATAACAAGCCTGATTTCTCTAACTTCGAGGCTAAGAAGTTCTCTTTCCTACCGAAGGAGATTTTTGAGAGGCACGAGGAGTACTTGTACTTAAAACTTGTTCAAGAAATTATCTCAAATGGTACCGCTAAGGAAGATAGAACAGGAACAGGTACTTTGTCAAGATTCGGGTGTCAGATGCGGTACAACTTGCGCAAAACGTTTCCGCTGCTTACAACTAAGGCATGTGCTGATTTTCTCGTTTTGATTTCTTTTGTAGCTAAAGTATTTTGGCGAGGGGTCGTTGAAGAACTTCTTTGGTTCATAAGTGGTTCGACGAATGCAAAGGGCCTTGTAGCCTTAGATGGCTCAGTGGTTCTTCCCATCATCCATACTTCTTTGTCTTTGTTTCCGATCCTCGTCCGTTTTATCGGAAGGGAACGGGAGGAGGGCGACTTGGGACCTGTATACGGGTTCCAATGGCGACACTTCGGTGCTAGGTATACTGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAGAACAATCCCGACGACCGGAGGATCGTTCTTTCTGCTTGGAATCCATCTGATCTCAAACTAATGGCACTTCCGCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAACGGGGAATTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCGTTCAATATTGCATCATATGCTCTTCTGACGTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGCGACTTCGTACACGTGATTGGAGATGCTCATGTTTACCGTACTCACGTGAGGCCATTGCAGGAGCAGCTTCAAAAACTCCCCAAACCGTTCCCGATTTTGAAGATTAACCCCGAGAAGAACGATATCGATTCTTTCGCGGCAGCTGATTTCGAATTAATCGGTTACGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTGTAG 1629 45.18 MAGDPLTSSDGNAQPDPRRTYQVVVAATENMGIGKDGQLPWTLPSDLKFFRNITTTTSDPGKRNAILMGRRTWEGIPPERRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIEANVDCDTFIPAIDKSMFQPWYSSFPVVENNFRYSFTSYVRVRSSIEPPIDQNNGPTGNNKPDFSNFEAKKFSFLPKEIFERHEEYLYLKLVQEIISNGTAKEDRTGTGTLSRFGCQMRYNLRKTFPLLTTKACADFLVLISFVAKVFWRGVVEELLWFISGSTNAKGLVALDGSVVLPIIHTSLSLFPILVRFIGREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIVLSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFVHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKNDIDSFAAADFELIGYDPHEKIAMKMAV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8864988 8869636 - Cp4.1LG05g12810.1 Cpe05g01272 470477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01272 542 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 223 542 IPR036926 -
Cpe05g01272 542 Pfam Dihydrofolate reductase 22 197 IPR001796 GO:0004146|GO:0046654
Cpe05g01272 542 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 233 542 IPR036926 -
Cpe05g01272 542 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 20 197 IPR001796 GO:0004146|GO:0046654
Cpe05g01272 542 TIGRFAM thym_sym: thymidylate synthase 355 542 IPR000398 GO:0004799|GO:0006231
Cpe05g01272 542 Hamap Thymidylate synthase [thyA]. 241 542 IPR000398 GO:0004799|GO:0006231
Cpe05g01272 542 SUPERFAMILY Dihydrofolate reductase-like 19 197 IPR024072 -
Cpe05g01272 542 CDD TS_Pyrimidine_HMase 244 495 IPR023451 -
Cpe05g01272 542 CDD DHFR 24 196 IPR001796 GO:0004146|GO:0046654
Cpe05g01272 542 PIRSF DHFR-TS 7 542 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cpe05g01272 542 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 2 542 - -
Cpe05g01272 542 Gene3D Dihydrofolate Reductase, subunit A 4 199 IPR024072 -
Cpe05g01272 542 PANTHER THYMIDYLATE SYNTHASE 1 2 542 IPR045097 GO:0016741
Cpe05g01272 542 Pfam Thymidylate synthase 244 542 IPR023451 -
Cpe05g01272 542 ProSitePatterns Thymidylate synthase active site. 404 432 IPR020940 GO:0004799|GO:0006231
Cpe05g01272 542 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 32 54 IPR017925 GO:0004146
Cpe05g01272 542 PRINTS Thymidylate synthase family signature 437 463 IPR000398 GO:0004799|GO:0006231
Cpe05g01272 542 PRINTS Thymidylate synthase family signature 393 412 IPR000398 GO:0004799|GO:0006231
Cpe05g01272 542 PRINTS Thymidylate synthase family signature 475 492 IPR000398 GO:0004799|GO:0006231
Cpe05g01272 542 PRINTS Thymidylate synthase family signature 295 316 IPR000398 GO:0004799|GO:0006231
Cpe05g01272 542 PRINTS Thymidylate synthase family signature 419 434 IPR000398 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01272 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 919.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01272 Cpe16g00253 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00253 Cpe-Chr16:4546545 Cpe05g01272 Cpe-Chr5:8864988 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01272 Cpe_Chr05 FPKM 14.421818 16.041416 14.994991 15.084659 17.082304 15.580304 18.407215 11.352591 9.634483 9.687561