Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01278 ATGGCTTCCCAGCAGCACTTATCCACCATTAAGGGCGCCAAAGTGCTCATGGTTGGCGCGGGAGGAATCGGATGCGAGCTTTTGAAGACTCTTGCTCTCTCGGGGTTTCAGGACATTCATATTATTGACATGGACACCATAGAAGTCAGCAACTTAAATCGACAATTTTTATTCCGAAAATCTCACGTAGGGCAATCAAAGGCTAAGGTCGCTCGAGATGCTGTCTTAAGATTTAGACCTCATGTTAGCATAACCTCGTATCATGCAAATGTCAAGAATCAAGAGTTTAATGTAGATTTCTTTAAGCAATTTAGTGTTGTTTTGAATGGACTTGACAACTTAGATGCGAGGCGACATGTGAATCGTCTATGCTTGGCAGCTGATATTCCCTTAGTCGAAAGTGGGACCACTGGATTCCTCGGACAGGTCACAGTTCATGTCAAGGGCAAAACAGAGTGTTACGAGTGCCAGCCGAAACCGGCCCCAAAAACATATCCTGTCTGTACGATTACTAGTACTCCGTCAAAGTTCGTTCACTGTATCGTTTGGGCAAAGGATCTACTTTTTGCAAAGTTATTTGGAGATAAGAATCAAGAAAACGATCTAAACGTGCGTTCAAGTGATCCAGCAAGTTCGTCTGACCATGCTGAAGATGTTTTTGAACTTAGAAAAGATGAAACTATTGAGCAGTATGGAAGAAGAGTGTTTGATCATGTATTTGGGTACAATATTGAAGTAGCTTTATCGAACGAAGATACTTGGAAAAATCGCAATAAACCGAGGCCTATTTATATTAGGGATATCCTGCCTGAGGAACCAACTAATCAGAATGGAAACATGGACAAAATCTGTGCCACTGATGAACAATCCTTAATTTCTGCTATGACATCTATTGGGATGAAAAATCCTCAGGAGACATGGAGTCTTATGGAAAATTCGAGAATCTTCATTGAAGCTATCTTAGCTGTGGAGTTCGTCACGGCGGCTGCGAACATTAGAGCTGCATCTTTTGGTATTCCTATGCATAGCCTTTTCGAGTCTAAAGGTATTGCTGGTAATATTGTGCATGCTGTTGCAACGACGAATGCCATTATTGCTGGATTGATTGTTATCGAGGCGATTAAGGTGCTACAAAATGATTTAAACAAATACAGGATGACGTATTGCCTCGAACACCCTTCGAGGAAGATGCTGCTCATGCCAGTGGAACCTTTTGAACCTAATAAATCCTGCTATGTTTGTTCTGAGACACCGTTATCGCTCGAGATAAATACACGTCATGCAAAGCTGCGGGACTTTGTTGAGAAGATAGTTAAGGCCAAGCTTGGGATGAACTTTCCACTTATTATGCATGGAGCTTCCCTTCTTTATGAAGTTGGCGACGATCTTGACGAGGACATGGTGGCAAATTACGCTGCAAACCTCGAGAAGGTACTGTCTGAGCTTCCTTCACCTGTCGTTAGCGGGACGATATTATCCGTTGAGGATCTCCAGCAAGAGCTTAGCTGCAGTATCAACATCAAACATAGAGACGAATTTGACGAGGAGAAGGAACCAGACGGTATGGTTCTATCTGGATGGCAGCAAACAACACTGGAAAAGGGTGATAGCATCCAGACATCGTTCAGCAATGGAGAAAGCACCTCGAAGGCGTTGCCCTCGACAACAGATGCTAATAAGAACGATGACGCAGACATCGTTGCTTCTGGAACGAAAAGAAAACTGGACGAGGCGTCTTCAGGTGTCGATGCATCAAGTTCAGCTAATGAAGCTAATAGCTTGAAGAAACTTGAAGTGCTCGACGACGACGACGACCTTGTCGTGCTCGATGATGATGGGGATTTGGTAACCAACAAGAAGAAAAGATTGCAGTAA 1875 43.36 MASQQHLSTIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRKSHVGQSKAKVARDAVLRFRPHVSITSYHANVKNQEFNVDFFKQFSVVLNGLDNLDARRHVNRLCLAADIPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDPASSSDHAEDVFELRKDETIEQYGRRVFDHVFGYNIEVALSNEDTWKNRNKPRPIYIRDILPEEPTNQNGNMDKICATDEQSLISAMTSIGMKNPQETWSLMENSRIFIEAILAVEFVTAAANIRAASFGIPMHSLFESKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDLNKYRMTYCLEHPSRKMLLMPVEPFEPNKSCYVCSETPLSLEINTRHAKLRDFVEKIVKAKLGMNFPLIMHGASLLYEVGDDLDEDMVANYAANLEKVLSELPSPVVSGTILSVEDLQQELSCSINIKHRDEFDEEKEPDGMVLSGWQQTTLEKGDSIQTSFSNGESTSKALPSTTDANKNDDADIVASGTKRKLDEASSGVDASSSANEANSLKKLEVLDDDDDLVVLDDDGDLVTNKKKRLQ 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8919056 8926276 - Cp4.1LG05g12780.1 Cpe05g01278 470483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01278 624 CDD Uba2_SUMO 14 414 - -
Cpe05g01278 624 PIRSF SUMO_E1B 1 601 IPR030661 GO:0016925|GO:0019948
Cpe05g01278 624 MobiDBLite consensus disorder prediction 538 596 - -
Cpe05g01278 624 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 421 513 IPR028077 -
Cpe05g01278 624 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 477 IPR035985 GO:0008641
Cpe05g01278 624 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 1 535 - -
Cpe05g01278 624 MobiDBLite consensus disorder prediction 538 562 - -
Cpe05g01278 624 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 535 IPR045886 -
Cpe05g01278 624 Pfam ThiF family 5 412 IPR000594 -
Cpe05g01278 624 Gene3D - 415 610 - -
Cpe05g01278 624 Gene3D - 159 213 IPR042063 -
Cpe05g01278 624 Gene3D - 322 355 IPR042063 -
Cpe05g01278 624 Gene3D - 15 158 - -
Cpe05g01278 624 Gene3D - 356 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01278 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - csv:101205378 1070.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01278 Cpe16g00263 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01420 Cpe-Chr3:11411747 Cpe05g01278 Cpe-Chr5:8919056 5.93E-38 dispersed
Cpe05g00983 Cpe-Chr5:6400904 Cpe05g01278 Cpe-Chr5:8919056 3.57E-06 dispersed
Cpe05g01278 Cpe-Chr5:8919056 Cpe16g00670 Cpe-Chr16:7003639 6.04E-06 dispersed
Cpe14g00720 Cpe-Chr14:5035439 Cpe05g01278 Cpe-Chr5:8919056 3.21E-18 transposed
Cpe16g00263 Cpe-Chr16:4633855 Cpe05g01278 Cpe-Chr5:8919056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01278 Cpe_Chr05 FPKM 13.04134 13.794307 14.278961 13.52472 11.33351 11.50681 11.11062 26.500317 24.316854 25.118252