Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01281 ATGGCTACTTACTATTCTAGTTCGAGTAATGGAAGGGATGCTACTCCTATCCTCTACTCGAGAGGAGCTTTGATCGGTTCGTATGAAGACTCGTCGATTCTTCCCCGGAATATGATGATGCATAATTCTGGGATGTACATGGATTCATGTCCTTCACAGGGAGACAATGGTTGTGGTCAGATAACGTCGGTTGGAGCAGCGGGAACGAGCCAACAACAGCAGGAGTTTTTGTCGAATCTCGGTGGTTCGGAGATTGCTGAGCATGATTTCAATACATGGAGAGGAGAGGGAAGGAGTGAAATGGTCGGTGCGAGCTCGATGCGTGGCCCGACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTTAGTACACAAATTCCATCTGGAATTCAAATGCCATCAATTCCTTATAGGAATTCGGATATGGGTTTAGCTTCGTTCTTGAGTCCGAATCCGACTAGTTCAGGCGACGATGGCTGCAGAAATGGCAGCTCTAGAGACGAGCAGTTGGCAAAGGGCGAATTATCTCAATACAGTATGTCTACGATTGCACGAACGATGCCGAACTCGAAGTACCTTAAGGCAGCACAACAACTCCTTGATGAAGCTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCTCACATGAGCATGAAACTAGAAGTGGAAAGAATGGTGATGCAGGAACCAAAAACGATGGTTCGATGCTCACTGCAAGCGGAGCGTCTTCAAACCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCTCATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTACCATCAGATGCAGATTGTGGTATCATCGTTTGATGTTATAGCAGGATGTGGGGCGTCTAAGCCATATACTGCACTTGCACTCCAGACTATATCTCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTTCGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAACTCTGGAAATGACAAAGGAGTTGGAATCACCCGTCTCCGGTACGTCGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGACTCTGATAAGATCATGTTGGCAAGGCAAACAGGATTGACTAGAAGTCAGGTACATGTCGTGGAGGCTGCCGATTTAGCTCCAAATCGTCTTCACATTTTATTTCTCCACCATGTCTATATCTACCTCGAGTTTTGTTGTACTGACATGTGTACCGATATTAAATTTGATGTCGTCGATGGGCTTGTGCAGGTCTCTAATTGGTTTATCAATGCACGCGTTCGTCTTTGGAAACCTATGGTAGAGGAAATGTACAAGGAAGAGGCAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGTTGGCAAGGGAACAAAAGGAGATAACAGGACCTTTGAGGATAATAAGGAGGAGGATCTGCAACAAAGTACAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGACATTATCGACTTAAAATCCGATCAAGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCTCAAAACGAGCTGGTAAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGCAGGAAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAACTGGGAAGGTTTGGGGCGGTTAGCGGGGTATCGCTTACACTGGGCTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCCACTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGAAATGTACAATGCTGCAGCGTCTTCTCTCGGGGACACAGGCCATTTTGAATGCGTAAACGCTGGTAATCCGCAACCGAGGTTCGGCCCTTCTCATCTTTACCATGATTTTGTTGTGTAA 2148 46.32 MATYYSSSSNGRDATPILYSRGALIGSYEDSSILPRNMMMHNSGMYMDSCPSQGDNGCGQITSVGAAGTSQQQQEFLSNLGGSEIAEHDFNTWRGEGRSEMVGASSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNSDMGLASFLSPNPTSSGDDGCRNGSSRDEQLAKGELSQYSMSTIARTMPNSKYLKAAQQLLDEAVNVRKALKRPNNERNQSSHEHETRSGKNGDAGTKNDGSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVHVVEAADLAPNRLHILFLHHVYIYLEFCCTDMCTDIKFDVVDGLVQVSNWFINARVRLWKPMVEEMYKEEAGSAEMDSISSSENVGKGTKGDNRTFEDNKEEDLQQSTSSTATERCSAGDIIDLKSDQASNLGNSGSTRLASFQNGAHIEAQNELVKSREELRPNVNNSNFFPDAIVQSQAGSDRFMAAAAAYHMSELGRFGAVSGVSLTLGLQHCEGGGIPMPTGTHHGFAAMRGDEMYNAAASSLGDTGHFECVNAGNPQPRFGPSHLYHDFVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8935118 8938923 - Cp4.1LG05g12790.1 Cpe05g01281 470486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01281 715 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 485 666 - -
Cpe05g01281 715 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 73 439 - -
Cpe05g01281 715 SMART prehox3 188 343 IPR006563 -
Cpe05g01281 715 Pfam Associated with HOX 195 342 IPR006563 -
Cpe05g01281 715 Coils Coil 275 295 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 240 272 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 514 528 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 218 239 - -
Cpe05g01281 715 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 439 - -
Cpe05g01281 715 CDD homeodomain 393 441 IPR001356 GO:0003677
Cpe05g01281 715 MobiDBLite consensus disorder prediction 151 167 - -
Cpe05g01281 715 Pfam Homeobox KN domain 410 496 IPR008422 GO:0003677|GO:0006355
Cpe05g01281 715 SMART HOX_1 393 504 IPR001356 GO:0003677
Cpe05g01281 715 MobiDBLite consensus disorder prediction 529 543 - -
Cpe05g01281 715 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 485 666 - -
Cpe05g01281 715 SUPERFAMILY Homeodomain-like 389 441 IPR009057 -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 510 552 - -
Cpe05g01281 715 Gene3D - 388 514 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 218 272 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 139 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01281 - - - csv:101205137 1165.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01281 Cpe16g00265 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01281 Cpe-Chr5:8935118 Cpe12g00736 Cpe-Chr12:6825921 5.10E-101 dispersed
Cpe16g00265 Cpe-Chr16:4649470 Cpe05g01281 Cpe-Chr5:8935118 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g4 . . . . . . Bma05g00433 . . . Cma02g00374 Cma20g00823 Car02g00241 Car20g00709 . . . . . . . . . . . . . . . . . Cone12ag1171 Cone8ag1218 Cone3ag1223 Cone10ag1108 Lsi10g00402 . Chy11g00350 . . . . . . . . . Sed02g0459 Cmo02g00381 Cmo20g00834 . . . . Cpe16g00265 Cpe05g01281 Bhi10g01966 Tan05g1259 Cmetu05g0753 . Hepe08g0990 . . . . . . . . . . Csa02g01292 . Cme11g00154
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010110 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01281 Cpe_Chr05 FPKM 3.136572 2.12969 3.934002 3.877768 4.933183 4.36105 4.663001 3.56181 4.272066 3.737836