Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01292 ATGGAGTGTTTGGAAGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGGAATCTGCTCAACAAGACGCTTTGGTGGAGGAAATTTGGTGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGATTTTGAAGTCGACGAGTTTTTTAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTGAGGAAAATGACGATTATCGTGAGTTTGAGAAAGACTTGGTCTCTGTTTCGTCGGATTCGAACCAGTCCGGCGAGATTCCGGCTGCCGGAGAGGAGGATTCGAAGTCGCTTCTTGCCGTTGAGCTTGCTATTCCGGGCGATGCTATGGCGGAGCTTGAATGGGTTTCTCATTTCGTCGATGATTCTCAGCTGGGATTTTCCAGCGCCGCCGTGGCTTTCAGCCGCTCCGAGCCGGAAAAGAACCTCGCCGGAGGTGTAATTTCGTGTTTGCCGACGTTTGTTCCGGTCAAACCAAGGACGAAAAGGTCGAGACAAAGTCGTCAAACGAAATCCACTGGTTCTTCTCTGAACCAATCGTCGTCGTCGTCCTCCTCCTCGACGTCCTCCGGCGTTTCCTCCGCCTCACCGTGGTTCATCTTCTCCGACGCCGGTGACAACGTGGACTCTTCAAACGCCGCCGGCGAGCCTCCGAAGAAGCAAAGGAAAAAGTCAATAACATCGTCGCCGACAGCTCTTCAATCCGGTGGTTTGACCGGTCAGATTCCGCGGCGGTGTAGTCACTGTCTGGTTCAGAAGACCCCACAATGGCGAACCGGTCCACACGGGGCCAAAACACTCTGCAACGCTTGTGGGGTCCGGTATAAATCCGGTCGGCTTTTTCCAGAGTATAGACCGGCGTTGAGCCCCACTTTTTGCAGCAATGTTCACTCAAACAGCCATCGAAAAGTGCTCGAAATGAGGAAGATGAAGGAGGTCTCCCAACCGGCAACCGAGTTGACTCCAATGGTCCGGAGTTACTAA 999 52.15 MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEDFEVDEFFNFSNGDFEHGSALRVEENDDYREFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDAMAELEWVSHFVDDSQLGFSSAAVAFSRSEPEKNLAGGVISCLPTFVPVKPRTKRSRQSRQTKSTGSSLNQSSSSSSSSTSSGVSSASPWFIFSDAGDNVDSSNAAGEPPKKQRKKSITSSPTALQSGGLTGQIPRRCSHCLVQKTPQWRTGPHGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSNVHSNSHRKVLEMRKMKEVSQPATELTPMVRSY 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9021238 9023083 + Cp4.1LG05g12840.1 Cpe05g01292 470497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01292 332 PIRSF Txn_fac_GATA_plant 4 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe05g01292 332 PANTHER GATA TRANSCRIPTION FACTOR 2 332 - -
Cpe05g01292 332 SMART GATA_3 245 295 IPR000679 GO:0006355|GO:0043565
Cpe05g01292 332 ProSitePatterns GATA-type zinc finger domain. 251 276 IPR000679 GO:0006355|GO:0043565
Cpe05g01292 332 MobiDBLite consensus disorder prediction 173 197 - -
Cpe05g01292 332 CDD ZnF_GATA 250 307 IPR000679 GO:0006355|GO:0043565
Cpe05g01292 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 308 - -
Cpe05g01292 332 ProSiteProfiles GATA-type zinc finger domain profile. 249 281 IPR000679 GO:0006355|GO:0043565
Cpe05g01292 332 MobiDBLite consensus disorder prediction 229 244 - -
Cpe05g01292 332 Pfam GATA zinc finger 251 284 IPR000679 GO:0006355|GO:0043565
Cpe05g01292 332 MobiDBLite consensus disorder prediction 214 244 - -
Cpe05g01292 332 MobiDBLite consensus disorder prediction 163 197 - -
Cpe05g01292 332 Gene3D - 244 320 IPR013088 GO:0006355|GO:0008270
Cpe05g01292 332 PANTHER GATA TRANSCRIPTION FACTOR 2 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01292 - - - csv:101205298 504.597
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01292 Cpe16g00276 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01292 Cpe-Chr5:9021238 Cpe14g00550 Cpe-Chr14:3491573 3.43E-61 dispersed
Cpe10g00648 Cpe-Chr10:3733494 Cpe05g01292 Cpe-Chr5:9021238 2.72E-41 wgd
Cpe16g00276 Cpe-Chr16:4752379 Cpe05g01292 Cpe-Chr5:9021238 4.21E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49589 PF00320 GATA 2.00E-15 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01292 Cpe_Chr05 FPKM 1.071856 1.927878 5.048958 3.119194 2.065989 0.0 3.432716 0.0 0.0 0.0