Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01298 ATGGCGGCCGCCGCGCTCAACCTCCCTTCTCTCTCTTCCTCTCCCTCTCCCTCTCTCTCTCATTCCACTCATTTCCTTCCAATCCCTCTTTCCCTCTCCTCGAAATCTCTTCCGAAATCCCACTCATTCCATTCCCATTCCCTTCCCAAACCCCTCCTCGTCGCAACCGCCGCCGCCGCCGCTGCCAAATCCCCCATCTCCCACTTCTTCTCCGATGACGATTCCGACGACAAGCCGCGTGAGGAGTGCGGCGTGGTCGGAATCTACGGCGACCACGAAGCCTCTCGCCTCTGCTATTTAGCCCTCCACGCTCTCCAACATCGCGGCCAAGAAGGCGCCGGTATCGTCTCCGTCAACGACGACGTCCTTCAATCCGTTACCGGCGTTGGCCTTGTCTCTGAGGTTTTCAATCAAACCAAACTCGATCAATTACCTGGCGATTCTGCTATTGGCCATGTTCGTTACTCCACGGCTGGAGCTTCCATGCTTAAGAATGTCCAGCCCTTCGTTGCTGGATATCGATTCGGCTCTGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATGGTTCTCTTAGAGCTAAACTTGAAGATTCTGGTTCAATTTTCAATACTAGTTCTGATACTGAAGTTGTTCTTCACCTTATTGCAATTTCTAAACAAAGGCCCTTCTTATTGAGAATTGTGGATGCTTGTGAACAGCTTGAAGGAGCTTATTCAATGGTGTTTATTACTGAAGATAAATTGGTAGCTGTTCGTGATCCTTATGGATTTAGGCCTTTAGTTATGGGTAGGAGAAGTAATGGCTCTGTTGTGTTTGCTTCTGAAACTTGTGCTCTAGATTTAATTGAAGCCACATACGATAGAGAAGTGTTTCCTGGTGAAGTTTTGGTAGTTGATAAAAATGGGATTCAATCCCTTTGTTTAATGGCTCATCCACAGCCAAAATCATGCATATTTGAACACATATACTTTGCTCTACCGAACTCAGTTGTTTTCGGGCGTTCTGTCTACGAATCCCGCCGAGCATTCGGCGAGATACTTGCAACCGAAGCCCCTGTCGATTGTGATGTCGTGATAGCCGTACCAGATTCAGGAGTAGTAGCTGCTCTTGGCTATGCAGCCAAAGCTGGTGTTGCTTTCCAACAAGGGCTCATAAGGTCACATTACGTTGGGAGGACATTCATAGAGCCATCGCAAAGGATTCGCGACTTCGGCGTAAAGCTAAAGTTGTCACCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTCGTGGTCGTGGATGATTCGATTGTTAGAGGCACCACATCTTCAAAGATTGTGAGGCTGTTAAAGGAAGCAGGGGCTAAAGAAGTGCATATGAGGATAGCTAGCCCTCCAATTATAGGGTCATGTTATTATGGAGTTGATACCCCAAGTGCTGAAGAACTGATATCAAACAGGATGAGTGTTGATGAAATAAGAGAGTTTATAGGCTGTGATTCACTTGCTTTTCTGCCATTTGATAGCTTAACGAAGCTTTTAGGCAATGATTCTTCAAACTTTTGCTATGCTTGCTTTTCAGGGAACTACCCAGTTGAGCCAAGAGAAATCAAAGTGAAAAGGGTTGGAGATTTTGTTGATGATGGCTTGAATGGAAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCTAATAGACATCAAAATCTTGAAAATCATCTCAATGTGGAGAAGGTTGGGGGCGTTTGA 1728 46.3 MAAAALNLPSLSSSPSPSLSHSTHFLPIPLSLSSKSLPKSHSFHSHSLPKPLLVATAAAAAAKSPISHFFSDDDSDDKPREECGVVGIYGDHEASRLCYLALHALQHRGQEGAGIVSVNDDVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGASMLKNVQPFVAGYRFGSVGVAHNGNLVNYGSLRAKLEDSGSIFNTSSDTEVVLHLIAISKQRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPYGFRPLVMGRRSNGSVVFASETCALDLIEATYDREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQRIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSAEELISNRMSVDEIREFIGCDSLAFLPFDSLTKLLGNDSSNFCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRHQNLENHLNVEKVGGV 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9060532 9062259 - Cp4.1LG05g13010.1 Cpe05g01298 470503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01298 575 Hamap Amidophosphoribosyltransferase [purF]. 82 523 IPR005854 GO:0004044|GO:0009113
Cpe05g01298 575 CDD PRTases_typeI 345 456 IPR000836 -
Cpe05g01298 575 Gene3D - 342 506 IPR029057 -
Cpe05g01298 575 Pfam Phosphoribosyl transferase domain 341 452 IPR000836 -
Cpe05g01298 575 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 83 306 IPR029055 -
Cpe05g01298 575 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 22 555 - -
Cpe05g01298 575 CDD GPATase_N 83 333 IPR035584 -
Cpe05g01298 575 SUPERFAMILY PRTase-like 318 529 IPR029057 -
Cpe05g01298 575 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 83 524 IPR029055 -
Cpe05g01298 575 Pfam Glutamine amidotransferase domain 163 280 IPR017932 -
Cpe05g01298 575 TIGRFAM purF: amidophosphoribosyltransferase 83 524 IPR005854 GO:0004044|GO:0009113
Cpe05g01298 575 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 83 302 IPR017932 -
Cpe05g01298 575 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 22 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01298 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 934.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01298 Cpe16g00281 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01298 Cpe-Chr5:9060532 Cpe10g00561 Cpe-Chr10:3297360 5.14E-08 dispersed
Cpe16g00281 Cpe-Chr16:4804185 Cpe05g01298 Cpe-Chr5:9060532 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe16g00281 CST 82 562 PRT Gene Family AT2G16570 84.5 2.5e-240 828.6
Cpe05g01298 CST 70 556 PRT Gene Family AT2G16570 83.2 2.7e-239 825.1
Cpe05g01298 CST 72 556 PRT Gene Family AT4G34740 85.0 1.1e-243 839.7
Cpe16g00281 CST 82 562 PRT Gene Family AT4G34740 85.3 1.7e-241 832.4
Cpe16g00281 CST 25 535 PRT Gene Family AT4G38880 69.5 3.0e-200 695.3
Cpe05g01298 CST 69 529 PRT Gene Family AT4G38880 73.0 1.9e-194 676.0
Cpe01g02140 . 1 170 PRT Gene Family AT1G71750 59.9 2.3e-60 229.2
Cpe06g00842 . 40 468 PRT Gene Family AT1G55810 87.2 1.1e-219 759.6
Cpe02g01427 . 19 469 PRT Gene Family AT1G55810 73.2 2.2e-191 665.6
Cpe04g00495 . 19 459 PRT Gene Family AT1G55810 72.5 6.8e-185 644.0
Cpe06g00842 . 65 467 PRT Gene Family AT3G27440 77.2 1.1e-184 643.3
Cpe02g01427 . 80 469 PRT Gene Family AT3G27440 74.6 1.4e-171 599.7
Cpe04g00495 . 80 459 PRT Gene Family AT3G27440 74.0 4.6e-167 584.7
Cpe02g01427 . 1 469 PRT Gene Family AT3G27190 85.5 4.1e-236 814.3
Cpe04g00495 . 1 459 PRT Gene Family AT3G27190 84.6 6.8e-231 797.0
Cpe06g00842 . 51 467 PRT Gene Family AT3G27190 79.9 2.8e-200 695.3
Cpe10g00910 . 4 266 PRT Gene Family AT3G53900 61.0 1.2e-92 337.0
Cpe06g00842 . 30 468 PRT Gene Family AT4G26510 81.7 4.3e-222 767.7
Cpe02g01427 . 11 469 PRT Gene Family AT4G26510 74.3 8.4e-202 700.3
Cpe04g00495 . 7 459 PRT Gene Family AT4G26510 74.2 1.1e-196 683.3
Cpe02g01427 . 1 469 PRT Gene Family AT5G40870 86.0 7.0e-236 813.5
Cpe04g00495 . 1 459 PRT Gene Family AT5G40870 84.6 3.1e-231 798.1
Cpe06g00842 . 51 470 PRT Gene Family AT5G40870 78.8 1.4e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01298 Cpe_Chr05 FPKM 13.530899 13.44383 9.257067 10.413966 19.270529 17.191715 19.197134 6.044758 5.796135 5.436116