Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01299 ATGCCGCATCTCCTGCAGCAAATTCATCCTCAATCCCATCATTTCCCACTCAAACTCTCATCTTCCCTCGCCTCTTCACGATTCCCCTCTCAATTTCTAGCTTCTCCGCCGTGTTTTTGCTCTCCGAATTCCGTCGCTGTTGTTCGTCGACGTCCGGTAATGAGAGGCGTAACCATACGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGTCCAAGCAGATTCAGAGGGAGCTTTCCAATATGCTTCTTACCGATAAGGTGTTGCAGTTCGCCATTCTTCCTGAGGCCTCTTTGGGAGCTGATAAGTACCTTTCGTCTCTCACTACCATCACCGATGTTGAAATCTCTAGCGACTTGCAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATATTGCTATGGCTGGGTTGAAATCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGGTTAACTCCTGAGATACGTTTTATAGAAGATGAGTCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAAGACGAAAAAAACAATATCGATGATGAAGACATGGAGCAATCTGAACTATCTGATTCTCCTCAAGACGACCGGGACTGGGAAGAGGATGATGCTGATGAAGACATAATATACGTACAATAG 684 44.44 MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVAVVRRRPVMRGVTIRCMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDLQVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDEKNNIDDEDMEQSELSDSPQDDRDWEEDDADEDIIYVQ 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9067083 9070368 - Cp4.1LG05g13030.1 Cpe05g01299 470504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01299 227 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 55 227 IPR000238 GO:0006364
Cpe05g01299 227 Pfam Ribosome-binding factor A 67 183 IPR000238 GO:0006364
Cpe05g01299 227 MobiDBLite consensus disorder prediction 192 227 - -
Cpe05g01299 227 Hamap Ribosome-binding factor A [rbfA]. 66 184 IPR000238 GO:0006364
Cpe05g01299 227 Gene3D - 62 178 IPR015946 -
Cpe05g01299 227 SUPERFAMILY Ribosome-binding factor A, RbfA 62 187 IPR023799 -
Cpe05g01299 227 MobiDBLite consensus disorder prediction 196 227 - -
Cpe05g01299 227 TIGRFAM rbfA: ribosome-binding factor A 62 189 IPR000238 GO:0006364
Cpe05g01299 227 ProSitePatterns Ribosome-binding factor A signature. 150 171 IPR020053 GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01299 K02834 rbfA; ribosome-binding factor A - csv:101215399 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00282 Cpe-Chr16:4808954 Cpe05g01299 Cpe-Chr5:9067083 8.87E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g60 . . . . . . . . . . Cma02g00357 . Car02g00224 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00426 . Chy11g00326 . . . . . . . . . Sed01g0251 Cmo02g00359 . . . . . . Cpe05g01299 Bhi10g01928 Tan05g1227 Cmetu11g1309 . Hepe08g0963 . . . . . . . . . . Csa02g01320 . Cme11g00451
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010825 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01299 Cpe_Chr05 FPKM 29.410919 29.832455 38.572632 35.779732 21.889435 19.219872 26.285997 28.518669 31.613024 35.856251