Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01307 ATGGAGGTCTCCTTCTCTTCCAACCCTCAATTACTCACCTTCAATCCATCTCTTCCTCTCAATTCCTCTTCCTCCTTCTCCTACACTCGCCTCCGCTTCGTTCGCCGCCAGTTTCTCGGTTCTTCTCATAATCTTCGCCCGCCGGATGTTCTGCGCTCTCGACGTAGGTGCACGAAGGTTGGCTTCCTTGTTCAGTCTCCGAGATGCATGTTTCGTGCTGCCTTCACTTCCAATCCGGTTCTCATCGTTGTTGCTGTGGTTACTTTCTCGGCTGTTTCGTTTATCTATATGAACTTAAATAAGAGGAAGAAGAATGCGGTTGAGCGTTCCCAATCTCCAACGCTTGCCTTATCTCAACTAGGTAGAGGCGTCAACTGGTCCGTCGATGATCAGGTAATGGGCTTTAGGGATCATCATGGTGACTTCTTAGAGCAGAATATAGCCGTAAAGGATAGAACTGAAGAGAGAAGTAATTCTGGGGAAGAAGAGACTGTTCTGCATCTTCAAACATCAGTTCTGTCACATGAGGCCAGTGTCACCGAAACATTGCCGCCATCTGTTGAATTTACCACATCTAGGGATAGTGGTTCTCTGTTTTCAGATGAAACTGAAGCAGCAGATCCCTCTCTTCCTTCTGATATGTTTGAATCTGGCGTCCTGCAGCCTCTTATTTTTGCCAACGACATGACTGACTTGCAGCTAAATGTATCTGATGTCAAATCCCACTCTGACTTGGCCGTTGTGCTTGATACAACTGAGCTTCCGCCTCTTTCTGGTCCTTTATATAGTGTATATAATCAAGTGACTCAAGATTTCAAAGCAGATGGCGAGCTTCTAAAAGTGGAGAAGTTAATCGGTTCCAATTTTCTAATTGAAGAACCGTCTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAGTCAAATGGCAACTTCTTCTCGTACTTCTCATCTATACAACCAAAAATTTTCTTCTGTGACGATTAACGGTGTCTCAAGAGGAGCAGAATTAATGTTGGAGGATTCTCGTCAAATTGCAGGATATGTTGAAAGAAGAGAACCTGTTGCAAGATATAAGGGAGGTTCTTCAGGGGACAAAAATAAATCTGGAGGGGGCAACAATATTGTAGGACACGGAGAAAGAAAAGAAGCCAGTCTGCATAAAGAGAAAGTTGTGAATGGGTTACCCTATCCAAATGGGAAGCATGTTCATAACAAAAATCTTCATGTAGATCAATATAAAGCGTACAATCAATGTCTGAAAGGTGGAAGGTTGAACGAATGTATCAAAATACTTCAGGATATGGAAAAAGCAGGCTTATTGGACATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCAAACTTATTGCAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCGAGTTCTCAAGATTCTGACAGAGCTTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCGGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAGAAACTTGAACGAAGCTTTATATGTCTNGTATTCCACCGAATGGTTAATGCTGAAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCCAAGGCATTTGGCGTATATGGAATAATGAGGTCAAAAAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGAGCAGTGGATCGTGCTTTTGATGTGCTGGCCGAAATGGGGGCTGAGCTACATCCTATAGAGCCTGATCATTTTACAATTGGTGCTTTGATCAAGGCATGTGCAAATGCTGGTCAGGTTGATCGGGCAAAAGAAGTGTATAAGATGATCCATGATTGTAACATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGTAGTCAATCTGGTGATTGGGACTTTGCTTCCACTGTATATCAAGATATGACCAGGAAAGGAGTAAAACCTGATGAGATTTTTTTCAGTGCATTAATAGATGCTGCAGGCCATGCTGGTAAGCTGGATTCTGCTTTTGAAATCTTAGGAGAAGCCAAGACACTGGGGATACGTGTTGGCATTGTATCATATAGTTCGTTGATGGGTGCCTGTAGCAATATTTTTTTCAGTGCATTAATAGATGCTGCAGGCCATGCTGGTAAGCTGGATTCTGCTTTTGAAATCTTAGGAGAAGCCAAGACACTGGGGATACGTGTTGGCATTGTATCATATAGTTCGTTGATGGGTGCCTGTAGCAATCATAAAGTGTCTAGTGTTATGAAGGTTAAGTTAGGAAATGCACCAACAATTCCCTGTGATGGGGAACAACTACAAATGGCTATGGATATTCAGAGAGAAATGAAGGGATTAGGACTCTACCCTAACAACATTACATACTCTATACTTATGGCAGCAAGTGAAAGGAATAATAATTTAGAAATTGCCCTCGAACTCCTCTCTCAAGCCAAAGAGGATGGTGTTGCCCCAACTTTAACCATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAGTTGCAGAGCCCTCTTCCCTTGATAGACCACTTTTATCTCTTGACACTAGCTGGCCTCAAGTCGATAGTAAGTGGGCAGCACAGGCCTTAATGGTGTACCGGGAAATAATCGAAGCCAGAATCGTTCCGAGCATTGAAATCTTATCTCAAGTTTTGGGGTGCTTGCAGATTTCTCATGATCCCTCCTTAAAACGTAGACTCATAGAAAACATTGGAGTAAGTGCTGACACATCAAGATCTTCAAATCTATGCTCCTTGATAGATGGCTTTGGAGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCATTTGTATCCCTCAAGGGAAGTCCTATTGTTGTAGATGTCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTGTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAAGTTACCGAACTTACTGATCTTACTGTCAGTTGAGACGACACAAATTCTCTCTTCCAAGGGCGAGAGGACCATTAACCTTGCTGGAAGGGTTGGACAAGCAGTTGCAGCATTGTTAAGAAGACTTGGACTTCCCTACCAAGGAAATGAATCAAGTGGAAAAATCAGAATCAATGGTTTAGCCTTGAGAAGATGGATGCAACCAAAACATTCCGATTCTCGAATTGGAAAACCTGGAGAGTTCAGCTCGTTTCAGTCACGTCTAGGAAAAGAAATAAGCCATCAGCAACGTAATATTCGCTCTGGGCATCTATCACTGGATTAA 3432 42.48 MEVSFSSNPQLLTFNPSLPLNSSSSFSYTRLRFVRRQFLGSSHNLRPPDVLRSRRRCTKVGFLVQSPRCMFRAAFTSNPVLIVVAVVTFSAVSFIYMNLNKRKKNAVERSQSPTLALSQLGRGVNWSVDDQVMGFRDHHGDFLEQNIAVKDRTEERSNSGEEETVLHLQTSVLSHEASVTETLPPSVEFTTSRDSGSLFSDETEAADPSLPSDMFESGVLQPLIFANDMTDLQLNVSDVKSHSDLAVVLDTTELPPLSGPLYSVYNQVTQDFKADGELLKVEKLIGSNFLIEEPSREDIYMFYEDTKSSSQMATSSRTSHLYNQKFSSVTINGVSRGAELMLEDSRQIAGYVERREPVARYKGGSSGDKNKSGGGNNIVGHGERKEASLHKEKVVNGLPYPNGKHVHNKNLHVDQYKAYNQCLKGGRLNECIKILQDMEKAGLLDMNKIYHGKFFNICKSKKAVQEAFQYTKLIANPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEKLERSFICLVFHRMVNAEVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHFTIGALIKACANAGQVDRAKEVYKMIHDCNIKGTPEVYTIAVNCCSQSGDWDFASTVYQDMTRKGVKPDEIFFSALIDAAGHAGKLDSAFEILGEAKTLGIRVGIVSYSSLMGACSNIFFSALIDAAGHAGKLDSAFEILGEAKTLGIRVGIVSYSSLMGACSNHKVSSVMKVKLGNAPTIPCDGEQLQMAMDIQREMKGLGLYPNNITYSILMAASERNNNLEIALELLSQAKEDGVAPTLTMYRCIIGMCLRRVAEPSSLDRPLLSLDTSWPQVDSKWAAQALMVYREIIEARIVPSIEILSQVLGCLQISHDPSLKRRLIENIGVSADTSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGSPIVVDVKELQIHTAEVYLLTVLKGLKHRLAAGSKLPNLLILLSVETTQILSSKGERTINLAGRVGQAVAALLRRLGLPYQGNESSGKIRINGLALRRWMQPKHSDSRIGKPGEFSSFQSRLGKEISHQQRNIRSGHLSLD 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9160289 9171814 - Cp4.1LG05g13160.1 Cpe05g01307 470512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01307 1143 MobiDBLite consensus disorder prediction 359 381 - -
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 836 870 IPR002885 -
Cpe05g01307 1143 Pfam Pentatricopeptide repeat domain 750 794 IPR002885 -
Cpe05g01307 1143 Pfam Pentatricopeptide repeat domain 824 882 IPR002885 -
Cpe05g01307 1143 Pfam Pentatricopeptide repeat domain 687 746 IPR002885 -
Cpe05g01307 1143 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Cpe05g01307 1143 TIGRFAM PPR: pentatricopeptide repeat domain 667 700 IPR002885 -
Cpe05g01307 1143 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Cpe05g01307 1143 TIGRFAM PPR: pentatricopeptide repeat domain 632 662 IPR002885 -
Cpe05g01307 1143 Gene3D Tetratricopeptide repeat domain 748 983 IPR011990 GO:0005515
Cpe05g01307 1143 Gene3D Tetratricopeptide repeat domain 417 539 IPR011990 GO:0005515
Cpe05g01307 1143 Gene3D Tetratricopeptide repeat domain 540 662 IPR011990 GO:0005515
Cpe05g01307 1143 Gene3D Tetratricopeptide repeat domain 663 747 IPR011990 GO:0005515
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 733 IPR002885 -
Cpe05g01307 1143 Pfam Pentacotripeptide-repeat region of PRORP 480 658 IPR033443 -
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 622 IPR002885 -
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Cpe05g01307 1143 Coils Coil 843 863 - -
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 591 IPR002885 -
Cpe05g01307 1143 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 747 1143 - -
Cpe05g01307 1143 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 75 747 - -
Cpe05g01307 1143 MobiDBLite consensus disorder prediction 183 199 - -
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Cpe05g01307 1143 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Cpe05g01307 1143 MobiDBLite consensus disorder prediction 183 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01307 - - - csv:101204147 1741.86
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01307 Cpe16g00291 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01307 Cpe-Chr5:9160289 Cpe17g00741 Cpe-Chr17:5864632 1.08E-31 dispersed
Cpe16g00291 Cpe-Chr16:4897112 Cpe05g01307 Cpe-Chr5:9160289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01307 Cpe_Chr05 FPKM 9.223729 14.480695 6.052602 5.663567 11.437185 10.724087 10.884009 53.919727 51.108032 52.219135