Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01309 AAACCCTACGCCGGAAACAACCCTAAACCCTACACCGAAGAACCAAACCTTCGCCGGGAGATAAACCCTACGCCGCCTCTTCTCGGGCCTGCAACAAAACAGAAGAAACAAGGGACTAGAGTTGTCTCACGAGGCCGTGAAGAAAATCCGATCCGTAGTTTTCGCATGGTTCCGGCAACAGCCGCCGAAGGTGAAGGCATTTTTGGCCGTCGTGCTTGGTATGGTGGGATGATATCGAAGTTGGAAAACGTTTGTTTCATTCGCAACGCAGTTGCAAGGAAATCTTGCATTGATTTTGAGATAGAGCTGAAAGTGAAGAATTCAAATATGAAGAGTAAAAAGAGAAAGCTGAAGAGTCCTCAAACATCTGAGAGGCCTTCCAAATCTGCTCGGCCTTTAGTCTCGCCGGAAGTGGAAGTTGTAGACGGAACAGAACAGGTTGAGAAGATGGAGCAGGGAGAAGTGTCTCAAGAGTTTGATGAAAGTTGTCCATGGAGGAACTTGGAGTTGATTTTCTTGATTCAGAACAAAGAATTCAACCAACAAAAGAAGGTCGATGCAGTGTTCAGCTTTGTAAACTCAAAGTGGAATGAGAAGGATAAATATCATGATAAGGTCAAAATGTCGCGCTTGATTGTTTTTCTTAGCGACTGGGTGCAGTCATTGTTGATTTCATCTGAAAAGAAAGCGAAGAATGATGGTGGAAAACATCATAACATGGGTATTGAGCCATGCTTAGATCATAGATGCTGGGAGGTATTTAAATTTTGTTTGGAAGAATCAGTAAAAACACTCATCCCTTTGAATCTCTCAAAAAATCTTTTGCATGCCTTTTGTTTTGTTACAAGAAGTGCAATATCTCTACTAGGGGATTTCTCGAGTTCAAGAGAAGAGTTGTTTTCCGGGGATTGTTTCAAGTTGTACAATGTTGTGCTTGATTGTGTTTCTTTAGTATTTTCTCCCCATTTGGGTCTATCCAATGAGAATCTAGATGCTTGGATTTCTACAATTGATGCAATGCTTGAGTTTCTTCACAAAATTTATGTAAGTAGCCTTGAAGATAAAGATGTAGGAATTTTTGCTATTAAATTTTCCTGTATGATGCTTAAGCCTTTTGCTAAATTTTTGTGGACTCACCCTACCAAGAAAGCTGGATTTCACAATTTTGTCAATAAGCTTTTGGAACCATTACTGCAATTATTGCTTGACATAAGCCTTAAAGCTGATGGGTGTGATCATTGTTGGACAAGAACATTGATGAAGTTACTTGAAGAAGTTCTATCTCATGCTTTGTTTCACACAGTGCATATCGATGGATTTTTGTGCTTACATGGTTCGGAGAAGGTTATAAAATCCCCTGATGAGAAATCAGAAGAGTCTAAAGCACATATTAAGAGCTATCATAGACATTTATTTGATAAAATGCAAAAACTAGTTGCAGGAAAGAAGTTTTCGGCATTGGGTGCGGTAGGAGAATTGTTTCATGTGCTTGTTGTCCGAGTTAAAAAGGTGAAAGGAGTTTCAATATCGTCTGAGGACACCAAACTGAATAACAAAATGAAGGATGATATATCAAGTCATGCATCCTCTGGACTCTCAGAGAAAAGCAATAACCAGAGCAGTTTGAGTACAGAAATAAGGAAGCCTCTATTTGAGTTTTTTGTACAAATTTTGGATCCTTTACTTCAGACAATTGAACACATTAGCGCTGAGATTAAACTGGGAACGGCCTTGTCAGATGTTCATTGCTTACTCAAGTCGATAAATAATCTACTTGCAAGTTTTATGAAGGAAAAGGTGTACTTGAGAACTGAGGATAACTCTGAAGGGGCTTACCATAATTTCTTAAAGAAGGTGTATGATACAGTAATGTTGGTTTCCTCTCATTTGCTTTTATTATCAAGACGTGAGATAAAAAACGATGTAGACCTGGAAGTATATGTTTTAGCTGGAAATGAGATACTGGTGACTCTTAGTTATCTTCTGGAAATTGAATATGATGTTATTGGGAATGATTTGGTGAGCTTATGGCTTGTGATCCTTTCTTACTCTGCTATTAATCTTTCTTTCACAAGCGTACCTAAGCAACACTTGTTAACTTCCAAGATTCAAGAGCTTGGATGTCAGCTGGTTGCCTTATATGGTCAACTACGGCAGGTCAACATTAGTATTTTTGCTCTATGTAAAGCCATGAGGACAGCGATATCAAATGAAGGCGAAACTGAAAAAGATTATGCTAGCTTTATGACTTCTTTAGGTCACGAAGCTTATGGGAAATCAGTTGGGATGCTACTTTCTTCACAAGAAATAAAATTTGCAATTCATAAAGCTATTAAATATATACCTGAAGGGCAAGCCAGCGGACTTATACAGCAGTTAACTGAGGACATGACAGAGACTTTAGGATGGCTGAGACAATGTAATATGAACATGAATACAAGAAACAACACAGAGGATTTGAATATGCAAACTGTGCTTCTTGGGAGAGGGCTGTCTGAAGTATATGCTTTGATGTTGGATTCACTGATGATCACATCTGGCAATGCGTTCCAAGTTGGAACTTCGATTGAGAACTTGGTTTCTGTCATACGTCCTTGCATGAGTAATTTGGTTGGGCCACAGGCAGATGGTGCCAAAGCATTCTTTGCTGCTGTCATGGGCGAAACATGTGATGCTATGGTTGCAGATGAAGATAATTGTCTTGGATTTGGAGTAACCAGTCATTGGGTCTTTGTTTTTTTCCTTTGCCTGTACATGTCCTGTCGGAACCTGTACAGGCAAGCTATTAGCCTGATGCCTCCAAGTTCATCTAGAAAGATGTCAGCAGCAATTGGAGACTCATTCGTAGCCTATTCTGCCTGTGATTGGATGCAGAGGACTGACTGGAGTGATGAAGGATATTTCTCATGGATAATTCGACCTTCAGCTTCTGTACTTGTTGTTGCCCAATCTGTTTGTAGTCTTTATCATCAAGACACCAGTGTAGGTTGGTACCCTTTAATTTATGTATTGCTCACCATGGCTCTTCAGAGGTTAGTGGATTTGAATAAACAAATAGGCTCCCTTGAGTATTTGTACCAGAGAAATGAGAATTTGATGCAGGTTGAGGTGCTTGGTGATGATGGCTTGTCCGTGTTACAGAAAAAGAGCAAAAAGTATTCGAGGCTTGTCTCTGTTTTGCGGAAAGAAGCAGAAGATCTTACTGATTTCATGATGAGGCATTTTTCTTTGGTAGCTAAACGTCAAGTTTTGAATTCAACTAAAGAAGTTGCGACTTCAAATGATAAATCTACTGTAATGCTTAGTGAGATTGATGATTGGGACTTCAGTATTTGTAACGTGAACAAAAGGTCATTCCCCACAGCAGTTTGGTGGATTGTTTGTCAAAATGTTGATATTTGGGTCAATCATGCTGCTAAAAAGAAGCTAAAAATGTTCCTTTCTTTTTTGATTCGTACGTCCCATCAATTTTTAGTAAGCATGATCCCATCTTTTATGAACACAGAGTTTTTGCCATCAAGGTTTTGTCGTGAGTTGAGCGCTTCATTATTATCATCTTTTCATGATATTAATACAAGTTCAACTGATTGGATGGAGGTGATATGCACACTTGAGCGCTTAACTAATAGTGTTTGCAGTGGAAAACGCACTCCTGATGATAGTGCTCCCCTTGCAAAAACAGTAAATCATTCATCTGATATGTTATATACAGAAGATTGCAAGTGGAAGGGTGATTCATCTCGAAGCAATTTGAGTTTCAGAGCTTGTCAGCATTTGATTGACCTTTTGTGTTGGATGCCAAAAGGGAACTTTAGTTCAAGGTCCTTTTCCCTTTATACGACTCATGTTCTCAAACTTGAAAGGCAATTGGTGAGTGCTTTATTAGATAATCAGACTGTTCTATGTTCAAATCAATTTGAACTCCTCAAATTGTTTGCATCTTGCCGGAAGGCCTTGAAATATATATTTATGGCTTACTATGAGGCTGGCAATGAACAAAGCTCATCTATTCCACTCCCATCTGAAAATCAATTTCCCGTTTCATGGCTTTTCAAGTCTATATCAATTGTTAATCGAATTCAAGAAGCTTCTGCAGGAGGTACTGCCACAAAAATTAAGGATATCATCTTCTCCTTGATGGATCACACATCATACTTGTTTTTAACAACTAGCAAATATCAATTTAAGAATGCTTTACGATTAATGGTAATTGACAACAAACCCTGCAAGGAGGAACACCAGGATGTTTGCCATGAACTAAATGATGGAGATGGTGTGTCTTTAGATTCCACTCACTGTGTAGAAGTGTGCAATAGTGCAATTCAAATGAGTATCAGTCTGAAGGAACAGGTGGAGAGTGAACTTATTTCTCTAAGGAAGTCTAATGTTTCAGTTGGAGATGGTAAAAATAGTGCCCAAATGTGTAAAGTTAATTCTCTAGCTTCTTGCCTTAATGGATTTTTGTGGGGCCTAGCCTCTTCTGTTGACCACACTGATTTGAGGAATGGTAACCGTCGCATGAGATCAATGAAGTTGAAATTTGAATACAGTTCCAAACTTAACCTTTGTATGAATGCAACTTCAGAACTGTTAGGTCTTATCTTGGAAATGTTTCTTGATAGAAACAGTCAATGGCCAACAAAATTGTGTGATAATCAACCATCTCAAGACCTTTTGGTTGTGGATGAGCTCCCGGTTAAGCACTCTGGCTCTGAGGCTGATACTTCATTTAGTAAAAATCGTGAATTAGAATCTTCCCATTGTGATGATGGCAGTGAAAGTGGTAGCACAAATAAAAAAAGGTTGAAATTAGAAAATAAAAGCAGTGTTGCATCCATTCTCAATGAGGCTAACACAATTGAGATGCAATCGTTGAACCAATCCTTTTTGCAAGGACTGCTGAAAGGATCCTGCCCTGATGTAGCATTTGCACTTAAACAGCTATTTCTTGCTGCTTCAGTCATTTTGAGATTGCATAAGCAATATGGTACCGTTCCTCTGTCATCAAGTTTTATGGCCATCCTAATTGGTTTTTCAAGATTCTTGTTGCTAGAATTTGAGAATATGGTTGAAGTGCCAGAACCATTTTTGTTTACATGCTTAGATGGTGTTCTTAAGTATCTGGAGGAATTAGGCCATCTGTTTCCTTCTGCTGATCCAATGAAATCCAGAGACCTATATTCTAGACTTGTAAATCTCCATTTGAAAGCAATGGGAAAGTGTATATCTCTACAGAGAAAAAGAGCTACTTTAGCATCCCATGAGACGGAGTCCACTACTAAGACTCTTGATGGTGGATTATTCGAAGAATCATCTTTTCCTGTAATCTACTGCATGGATGAATTTAAAGCTTCATTGAGAATGTCATTCAAAGTGTTCATAAGGGAAGCCTCGGAGTTGCATCTCTTATCTGCTATTCAAGCTATAGAGAGAGCCCTAGTTGGAGTGCAGGAAGGTTGTACAGCGACATATGAATTATGTTCTGGAAGTGAAGATGGGGGAAGCTGTTCCTCTATTGTTGCGGCTGGTGTTGAATGCTTGGATCTGGTTCTTGAATTTGTTTCAGGACGTAAATGTTTGGGTGTGGTTAAAAGACACATTCAGAGCTTAATTGCTGGTCTGTTTAGCATAGTTCTGCACCTGCAGAGCCCACATATTTTTTATGTAAGAACGATTGACACAAAAGGCAGGAGCGATCCAGATCCCGGAGCAGTCATTCTTATGTCTGTTGAAGTGCTTGCAAGAGTTTCAGGGAAGCATGCTATATACCAAATGAATGCTTGGCATGTAGCACAGTGTTTACGCATTCCTGCAGCACTTTTTGAAGATTTTTCTCTTAAGCTCCCAGGAATTCCTGTTCAATCAGAAAAGTCCCTTATCTCAACTCAGGAAGCTTCCAATACAGTTGTAGCCACAAGTAATTCGATTATAGACAGACAATTCTTAATAGATCTTTTCGCTGCCTGCTGCCGTTTGTTATTTACCGTTCTCAAGCATCATAAGAGTGAGTGCAAGCAGTCCATTGCTCAGCTACAAGCATCAGTGTCCGTTCTTCTTCATTCCCTTGAAAGAGTAGATCCAGATCCGGAACTTGTGGGTGGTTACTTTTCATGGAATGTAGATGAGGGAGTAAAGTGTGCTTGTTTCCTCCGAAGGATTTATGAAGAGATAAGACAGCAGCGGGAATTTGTAGGGCGACACTGCTCCCTCTTTCTCTCGAATTACATATCGGTTTACACGGGACTCGGTCCCCTAAAATCCGGGATTAGAAGGGAAATCGACAAAGCGTTAAGGCCCGGTGTCTACGCTCTAATAGATGCCTGTTCAGCTGAGGATCTTCAATATCTTCACACTGTATTTGGCGAAGGTCCATGTAGAAATGCTCTGGCAACATTGCAGCAGGATTACAAACAATTTTTCCAATACGAAGGAAAAGTCTGA 6441 39.54 KPYAGNNPKPYTEEPNLRREINPTPPLLGPATKQKKQGTRVVSRGREENPIRSFRMVPATAAEGEGIFGRRAWYGGMISKLENVCFIRNAVARKSCIDFEIELKVKNSNMKSKKRKLKSPQTSERPSKSARPLVSPEVEVVDGTEQVEKMEQGEVSQEFDESCPWRNLELIFLIQNKEFNQQKKVDAVFSFVNSKWNEKDKYHDKVKMSRLIVFLSDWVQSLLISSEKKAKNDGGKHHNMGIEPCLDHRCWEVFKFCLEESVKTLIPLNLSKNLLHAFCFVTRSAISLLGDFSSSREELFSGDCFKLYNVVLDCVSLVFSPHLGLSNENLDAWISTIDAMLEFLHKIYVSSLEDKDVGIFAIKFSCMMLKPFAKFLWTHPTKKAGFHNFVNKLLEPLLQLLLDISLKADGCDHCWTRTLMKLLEEVLSHALFHTVHIDGFLCLHGSEKVIKSPDEKSEESKAHIKSYHRHLFDKMQKLVAGKKFSALGAVGELFHVLVVRVKKVKGVSISSEDTKLNNKMKDDISSHASSGLSEKSNNQSSLSTEIRKPLFEFFVQILDPLLQTIEHISAEIKLGTALSDVHCLLKSINNLLASFMKEKVYLRTEDNSEGAYHNFLKKVYDTVMLVSSHLLLLSRREIKNDVDLEVYVLAGNEILVTLSYLLEIEYDVIGNDLVSLWLVILSYSAINLSFTSVPKQHLLTSKIQELGCQLVALYGQLRQVNISIFALCKAMRTAISNEGETEKDYASFMTSLGHEAYGKSVGMLLSSQEIKFAIHKAIKYIPEGQASGLIQQLTEDMTETLGWLRQCNMNMNTRNNTEDLNMQTVLLGRGLSEVYALMLDSLMITSGNAFQVGTSIENLVSVIRPCMSNLVGPQADGAKAFFAAVMGETCDAMVADEDNCLGFGVTSHWVFVFFLCLYMSCRNLYRQAISLMPPSSSRKMSAAIGDSFVAYSACDWMQRTDWSDEGYFSWIIRPSASVLVVAQSVCSLYHQDTSVGWYPLIYVLLTMALQRLVDLNKQIGSLEYLYQRNENLMQVEVLGDDGLSVLQKKSKKYSRLVSVLRKEAEDLTDFMMRHFSLVAKRQVLNSTKEVATSNDKSTVMLSEIDDWDFSICNVNKRSFPTAVWWIVCQNVDIWVNHAAKKKLKMFLSFLIRTSHQFLVSMIPSFMNTEFLPSRFCRELSASLLSSFHDINTSSTDWMEVICTLERLTNSVCSGKRTPDDSAPLAKTVNHSSDMLYTEDCKWKGDSSRSNLSFRACQHLIDLLCWMPKGNFSSRSFSLYTTHVLKLERQLVSALLDNQTVLCSNQFELLKLFASCRKALKYIFMAYYEAGNEQSSSIPLPSENQFPVSWLFKSISIVNRIQEASAGGTATKIKDIIFSLMDHTSYLFLTTSKYQFKNALRLMVIDNKPCKEEHQDVCHELNDGDGVSLDSTHCVEVCNSAIQMSISLKEQVESELISLRKSNVSVGDGKNSAQMCKVNSLASCLNGFLWGLASSVDHTDLRNGNRRMRSMKLKFEYSSKLNLCMNATSELLGLILEMFLDRNSQWPTKLCDNQPSQDLLVVDELPVKHSGSEADTSFSKNRELESSHCDDGSESGSTNKKRLKLENKSSVASILNEANTIEMQSLNQSFLQGLLKGSCPDVAFALKQLFLAASVILRLHKQYGTVPLSSSFMAILIGFSRFLLLEFENMVEVPEPFLFTCLDGVLKYLEELGHLFPSADPMKSRDLYSRLVNLHLKAMGKCISLQRKRATLASHETESTTKTLDGGLFEESSFPVIYCMDEFKASLRMSFKVFIREASELHLLSAIQAIERALVGVQEGCTATYELCSGSEDGGSCSSIVAAGVECLDLVLEFVSGRKCLGVVKRHIQSLIAGLFSIVLHLQSPHIFYVRTIDTKGRSDPDPGAVILMSVEVLARVSGKHAIYQMNAWHVAQCLRIPAALFEDFSLKLPGIPVQSEKSLISTQEASNTVVATSNSIIDRQFLIDLFAACCRLLFTVLKHHKSECKQSIAQLQASVSVLLHSLERVDPDPELVGGYFSWNVDEGVKCACFLRRIYEEIRQQREFVGRHCSLFLSNYISVYTGLGPLKSGIRREIDKALRPGVYALIDACSAEDLQYLHTVFGEGPCRNALATLQQDYKQFFQYEGKV 2146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9178795 9188137 - Cp4.1LG05g13140.1 Cpe05g01309 470514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01309 2146 MobiDBLite consensus disorder prediction 1574 1601 - -
Cpe05g01309 2146 PANTHER UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG 149 2146 - -
Cpe05g01309 2146 Pfam Urb2/Npa2 family 1910 2145 IPR018849 -
Cpe05g01309 2146 MobiDBLite consensus disorder prediction 110 135 - -
Cpe05g01309 2146 MobiDBLite consensus disorder prediction 520 539 - -
Cpe05g01309 2146 MobiDBLite consensus disorder prediction 1 49 - -
Cpe05g01309 2146 MobiDBLite consensus disorder prediction 523 539 - -
Cpe05g01309 2146 MobiDBLite consensus disorder prediction 1569 1601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01309 - - - bhj:120089295 3175.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g98 . . . . . . Bma05g00411 . . . . . Car02g00212 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00461 . Chy11g00299 . . . . . . Bpe05g00307 . . . . . . . . . . Cpe05g01309 Bhi10g01894 . . . Hepe08g0949 . . Cla02g01117 Cam02g1190 . Cco02g1246 Clacu02g1180 Cmu02g1140 Cre02g1456 . Csa02g01350 . Cme11g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010116 0 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01309 Cpe_Chr05 FPKM 7.663744 8.95674 17.309387 18.35677 24.944668 21.083921 23.875153 7.397562 8.232658 6.835395