Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01310 ATGTCTCCGGCAGCCATGGATCAACCACGCGACGCTCCAATTCCGAATCCTGTCACACCCTCCATTGAGCTTTCAGGGCACCCAAATCGCTCCCAATCCAGCTCCAGGTCTGAATGTGAATTGAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGATAGAGAGAAACTAAGAAGGGACAGATTGAATGAACAATTTGTTGAGCTGGGAAGAGTTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAGTGGATGCAATTCAGTTGCTGAAGGATTTGACATCTCAAGAAAAGAATAATCTAAGAGAAGAGAAGGCATCACTCAAATCTGATATTGAGAATCTCAATTCTCAATATCAGCAAAGACTCATGGCTACTAACTCTATTGTCATGGCCCCTGCTCCCTTTCCATTTCCAATGCCAATGCCAATGCCACCAGGGCCATTTCCTCTACATCCAACCTCGCAGCCTTACATGTTCTTCGGAAATCAAAATCCTAGAGTGATAGCAAACCCATGTTCCCCGTTCGTCCAATACATAGCTCCTAATTCCATGACTGAGCAGCAGTCCTCCCGACATGCACCGCCTTTCGTTCATCCAAGCAAGCACGATTCGTCGTTCGAACAATCGAACGACACGAACAGGAACGAAAATAATCCATCAGAAGTAGAACTAGAGGAGAGTTCTTCAAGTGAATGTTTTTATCTCCTAAGCTCGGCCATGGCGGTGGTGTCTACTTCTCTTGCATCTCAACTCTCATCTGTCCGGTTGTCAGGTTCCAACTCCGACATTTCTCAGACTCTATTGCAAAACGTTCGCTCACAAATCCGCCTTGCATCCTCAAGGAAAGGCTCCCGCGGCGTTGTTGCCATGGCCGGCTCCGGAAAGTTCTTCGTTGGTGGAAACTGGAAATGCAATGGTACAAAGGAATCTATATCCAAGCTTGTCGCGGACTTGAACAATGCAAAGTTGGAAGATGACGTTGATGTTGTTGTAGCACCTCCCTTTGTTTATATTGATCAGGTGAAGAGCTCATTGACATCTAGGATTGAGATCTCTGCCCAAAATTCATGGGTGAGCAAGGGTGGTGCTTTTACCGGAGAAATCAGTGTTGAACAATTGAAAGATCTAGGCTGCAAGTGGGTTATCCTTGGGCACTCGGAACGTAGACATATCATTGGTGAAGATGACCAGTTCATAGGAAAGAAGGCTGCCTATGCCTTGAGCGAGGATGCTGTTCCGAGTTGGGATGGTATTGTTATCGCTTATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTTCGCCCGAGCAAGCTCAGGAAGTGCATGCAGCAGTTCGTGATTGGCTTAAGAAGAATGTATCACCAGAAGTGGCATCTAAAACACGAATTATTTATGGAGGATCGGTGAATGGAAGTAATTGTGCGGAGCTTGCCAAAAAAGAGGATATAGATGGATTTCTAGTTGGAGGTGCTTCGTTGAAGGGTCCCGAATTTGGAACAATAGTTAACTCTGTAACTGCCAAGAAAGTCGCTGCTTGA 1557 45.99 MSPAAMDQPRDAPIPNPVTPSIELSGHPNRSQSSSRSECELKDSAAARRVQKADREKLRRDRLNEQFVELGRVLDPDRPKNDKATILVDAIQLLKDLTSQEKNNLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPMPMPPGPFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAPNSMTEQQSSRHAPPFVHPSKHDSSFEQSNDTNRNENNPSEVELEESSSSECFYLLSSAMAVVSTSLASQLSSVRLSGSNSDISQTLLQNVRSQIRLASSRKGSRGVVAMAGSGKFFVGGNWKCNGTKESISKLVADLNNAKLEDDVDVVVAPPFVYIDQVKSSLTSRIEISAQNSWVSKGGAFTGEISVEQLKDLGCKWVILGHSERRHIIGEDDQFIGKKAAYALSEDAVPSWDGIVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKKNVSPEVASKTRIIYGGSVNGSNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKVAA 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9192641 9205287 - Cp4.1LG05g13170.1 Cpe05g01310 470515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01310 518 Gene3D Aldolase class I 280 416 IPR013785 -
Cpe05g01310 518 Gene3D Aldolase class I 417 517 IPR013785 -
Cpe05g01310 518 ProSitePatterns Triosephosphate isomerase active site. 426 436 IPR020861 GO:0004807
Cpe05g01310 518 MobiDBLite consensus disorder prediction 22 40 - -
Cpe05g01310 518 CDD bHLH_AtILR3_like 52 119 - -
Cpe05g01310 518 SUPERFAMILY Triosephosphate isomerase (TIM) 298 510 IPR035990 GO:0004807
Cpe05g01310 518 Pfam Triosephosphate isomerase 420 510 IPR000652 GO:0004807
Cpe05g01310 518 Pfam Triosephosphate isomerase 302 417 IPR000652 GO:0004807
Cpe05g01310 518 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 300 510 IPR000652 GO:0004807
Cpe05g01310 518 MobiDBLite consensus disorder prediction 189 229 - -
Cpe05g01310 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Cpe05g01310 518 SMART finulus 53 103 IPR011598 GO:0046983
Cpe05g01310 518 MobiDBLite consensus disorder prediction 215 229 - -
Cpe05g01310 518 PANTHER TRIOSEPHOSPHATE ISOMERASE 415 516 IPR000652 GO:0004807
Cpe05g01310 518 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 250 414 - -
Cpe05g01310 518 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 415 516 - -
Cpe05g01310 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 104 IPR036638 GO:0046983
Cpe05g01310 518 Gene3D - 42 109 IPR036638 GO:0046983
Cpe05g01310 518 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Cpe05g01310 518 PANTHER TRIOSEPHOSPHATE ISOMERASE 250 414 IPR000652 GO:0004807
Cpe05g01310 518 CDD TIM 301 509 IPR000652 GO:0004807
Cpe05g01310 518 MobiDBLite consensus disorder prediction 1 54 - -
Cpe05g01310 518 Coils Coil 88 122 - -
Cpe05g01310 518 Hamap Triosephosphate isomerase [tpiA]. 299 510 IPR022896 GO:0004807|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01310 K01803 TPI, tpiA; triosephosphate isomerase (TIM) [EC:5.3.1.1] - csv:101213372 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01310 Cpe-Chr5:9192641 Cpe16g00612 Cpe-Chr16:6713760 1.33E-80 dispersed
Cpe10g00664 Cpe-Chr10:3835404 Cpe05g01310 Cpe-Chr5:9192641 9.13E-38 wgd
Cpe16g00296 Cpe-Chr16:4919574 Cpe05g01310 Cpe-Chr5:9192641 3.57E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g111 . . Bda06g00968 . Bpe07g00490 . Bma05g00413 . . . Cma02g00329 . . . . . . . . . . . . . . . . . . . . Cone12ag1212 Cone8ag1264 . . Lsi10g00463 . Chy11g00295 . . . . . . . . . Sed01g0221 . . . . . . . Cpe05g01310 Bhi10g01891 Tan05g1191 Cmetu11g1417 . Hepe08g0945 . . Cla02g01113 Cam02g1185 . . Clacu02g1175 Cmu02g1136 . . Csa02g01354 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001472 1 2 3 3 2 2 2 2 2 2 2 2 3 1 2 3 2 4 3 2 2 2 2 2 2 2 2 6 5 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49590 PF00121 TIM 6.70E-35 CL0036 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01310 Cpe_Chr05 FPKM 1.450131 1.859521 2.183515 1.985577 1.822898 1.490646 1.509289 0.921315 1.10631 0.836245