Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01313 ATGAGGAATCCTTCTCTGTTTGGAAGGACACCCTTGTTGTGCTTCTTCTTGGTGTCATTTGTATTTGCTGCAACCTTGTGCTATGCTGATGTGAAGACGGTCGAGGTCGTTGGCGTTGGCGAATCCATAGATTGCAAATCAACCGATGGCCACTTCAAAACAAGAGGAATTGGAGAGCTAAACGAAGAAGGAAAGTTCAAAGTATTGCTTCCAAATACCATTGTGAAAGATGAAAAATTAAAGGAAGAATGCTATGCACAGCTTTACAGTGCATCAGCCACCCCTTGCCCTGCCCATCATGACCTTCCCTCCTCTAAGCTCATTTTGGTGTCCAAATCAGACCAAACACACACCTTTGGGCTCTCAGGTAACCTCAAGTTTTCACCTCAAACTTGCACATCAGCCTTCTTGTGGCCATCTTTCAAGTACCCTCCCCTCCCAAACTTCCCTCACTTCCCTTTGCCTCTCCCTCTAATCCCCAAGTTTCACCATCCATACTTCAAACACTTTCTCCACCCATTCTACAAAAAACCAACTCCACCACCGGTTCCCATTTACAAGAAGCCTAGTCCTCCTCCTGTCTACAAAAAACCCCTCCCACCGTCGGTTCCTGTTTACAAAAAGCCTCTTCCACCACCGGTTCATGTGTATAAGAAACCACTTCCACCGCCGGTCCCTGCTTACAAAAAGCCTCTTCCTCCGGTTCCTGTGTATAAGAAACCACTTCCACCACCGGTTCCTATTTACAAGCCTCCCATCCCAAAGATCCTACCACCACCTAGTCCCATTCCATTTTTGAAGCCAAAACATCCCTTCTTCAAGCATCTACCTCCCATTCCAAAGATACCCCATCATCCTTTCCTTAAGAAGCCATGGCCTCCCATTCCTCACTTCCCTCCTCTTCCCAATTTCCCACCAAAGTACTTCTCCCACCACAAGTTTGGAGGTTTCCCTAAACACCCACCTCCTGCTCATCATTAG 981 47.09 MRNPSLFGRTPLLCFFLVSFVFAATLCYADVKTVEVVGVGESIDCKSTDGHFKTRGIGELNEEGKFKVLLPNTIVKDEKLKEECYAQLYSASATPCPAHHDLPSSKLILVSKSDQTHTFGLSGNLKFSPQTCTSAFLWPSFKYPPLPNFPHFPLPLPLIPKFHHPYFKHFLHPFYKKPTPPPVPIYKKPSPPPVYKKPLPPSVPVYKKPLPPPVHVYKKPLPPPVPAYKKPLPPVPVYKKPLPPPVPIYKPPIPKILPPPSPIPFLKPKHPFFKHLPPIPKIPHHPFLKKPWPPIPHFPPLPNFPPKYFSHHKFGGFPKHPPPAHH 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9218000 9219718 + Cp4.1LG05g13110.1 Cpe05g01313 470518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01313 326 Pfam Pollen protein Ole e 1 like 39 101 - -
Cpe05g01313 326 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 1 41 - -
Cpe05g01313 326 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 42 221 - -
Cpe05g01313 326 PRINTS Proline rich extensin signature 243 268 - -
Cpe05g01313 326 PRINTS Proline rich extensin signature 173 194 - -
Cpe05g01313 326 PRINTS Proline rich extensin signature 219 236 - -
Cpe05g01313 326 PRINTS Proline rich extensin signature 198 214 - -
Cpe05g01313 326 PRINTS Proline rich extensin signature 139 155 - -
Cpe05g01313 326 PANTHER PROLINE-RICH PROTEIN 2 1 41 - -
Cpe05g01313 326 PANTHER PROLINE-RICH PROTEIN 2 42 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01313 - - - cmo:103497511 271.166
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01313 Cpe16g00299 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00577 Cpe-Chr4:6182973 Cpe05g01313 Cpe-Chr5:9218000 9.72E-49 dispersed
Cpe16g00299 Cpe-Chr16:4940508 Cpe05g01313 Cpe-Chr5:9218000 7.27E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g117 . . . . . Bpe12g00110 Bma05g00415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00465 Csa07g00082 . . . Blo13g00524 . . . . . . . . . . . . . Cpe16g00299 Cpe05g01313 . . . . . . . Cla02g01128 Cam02g1203 Cec02g1206 Cco02g1256 Clacu02g1192 Cmu02g1154 Cre02g1464 . Csa02g01357 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001811 3 2 2 5 2 3 1 3 3 1 3 3 2 2 2 2 3 3 2 2 1 2 1 2 2 1 2 2 2 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01313 Cpe_Chr05 FPKM 36.871727 44.025162 3.738181 2.307676 8.83031 6.794084 10.336167 10.303024 10.982565 10.179463