Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01322 ATGGGGGAATTTGAAGATGAGAGCCTTGTTAGTCCTTCATCATTAACTAGAAAGAACTTTTCTATTGAGGGTCCTTCGCATTCTTCTTCATTGGCTGGTAGTACGCAGAAATTTTGTTATAGTAACATGAAGAACAGGGTGTTTCGCAGCATTAAGATCGTCGTTTTCTCGGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTAGCAATAGTAGTCAGCAATTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTCGCCGAGCGTTTGGGTTATGCAACCGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCATTGTTAGGTTCAATTTTGTCAAATATGTTGTTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCGAAGAGGGAGCAGGTCTTCAATAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCCGAGTTAGCTCTTTCGAGATTTAGTAGCGGCATTATGTTGGTGGCGTATGCTGCCTATCTTGTTTTTCAGCTGAAAAGCGACAAGAACTTATATCTACCGGTTGATGAGGCGGTTACTGATGAAAATTATGATGATGATGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTACTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCTGAATACTTGGTTAATGCAATAGAGGGGGCGTCGGTTGCCATGAACATACCGGTAGCGTTCATTAGTGTTATCCTACTACCCATTGTTGGGAACGCTGCAGAGCATGCAGGAGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCGATAGGATCGTCTACACAGATATCGATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTCTTCGAGACTGCCACGCTTTTCATCACGGTCATTGTCGTAGCCTTCATGTTACAGGACGGAACATCTAATTACCTCAAAGGACTTATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGGTAAGCTCTCACTCCCTTTACAGCAGCCATTGGAGGCACCACAAAACTGTTGA 1323 43.39 MGEFEDESLVSPSSLTRKNFSIEGPSHSSSLAGSTQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAIVVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFNKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEAVTDENYDDDDDEEAPEISMWESITWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGKLSLPLQQPLEAPQNC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9283872 9290785 + Cp4.1LG05g13250.1 Cpe05g01322 470527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01322 440 Pfam Sodium/calcium exchanger protein 276 412 IPR004837 GO:0016021|GO:0055085
Cpe05g01322 440 Pfam Sodium/calcium exchanger protein 82 237 IPR004837 GO:0016021|GO:0055085
Cpe05g01322 440 TIGRFAM cax: calcium/proton exchanger 64 415 IPR004798 GO:0006816|GO:0015369
Cpe05g01322 440 Gene3D - 259 416 IPR044880 -
Cpe05g01322 440 Gene3D - 110 253 IPR044880 -
Cpe05g01322 440 TIGRFAM caca2: calcium/proton exchanger 49 415 - -
Cpe05g01322 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 426 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cpe05g01322 440 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01039 Cpe-Chr3:8471808 Cpe05g01322 Cpe-Chr5:9283872 0 dispersed
Cpe05g01322 Cpe-Chr5:9283872 Cpe08g00825 Cpe-Chr8:6579625 5.22E-24 dispersed
Cpe08g00824 Cpe-Chr8:6576092 Cpe05g01322 Cpe-Chr5:9283872 2.60E-38 transposed
Cpe16g00366 Cpe-Chr16:5336225 Cpe05g01322 Cpe-Chr5:9283872 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01322 K07300 - csv:101215915 748.429