Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01327 ATGACTGTATACACAATGGGGGCTATCGATTCCATAGGCATAAGGCTCAACAACAATGCCCATCATTACCCTCTTTCTTCTTCAATTTCTGCCCCAAATGACTGTTGCAGCAGCTATGGCCGTTTCTTGGGTCTTCGTTTTTCTCTTCGCCCAAAACAAACTGGGTTTCGTTTTAGGTCATTTTGCTCTCTGCCCGGCAGCGGAGAATCTGAATCCCCTGTTCCTGGTAGCAGCGACGGCCGGTTTAGCAGAGGCGAAGGTTCGCCGTCGGCGACGGGTATAAAATGGAGGAAAGAAGAGGAGGAAGAAGAAGACAATACAGAAGAAGACGAAGAAGAAGAAGGTATCCCCTCTGGAATTGGGAGTTCAACAATAATCTCATCGTGTTTCGTTGGTGTTCTTACGGGCATCGGCGTCGTGCTCTTCAATAACGCAGTGCATGAGCTACGTGATTTTTTCTGGGATGGAATTCCTAATAGAGGAGCTTCTTGGTTAAGAGAAATGCCTGTTGAAGAAACATGGAAACGAGTTATATTGGTTCCTGCTTGTGGGGGATTTCTTGTTAGCTTTCTAAATCTGCTTAGAGAGGCTACAGACAATGATCCTTCCACGAAACTTGGAGTTCCAGTTTCCATTTCTAATCAATTCAGGGCTGCACTGCAACCTTTCCTTAAGGCTGTAGCTGCTTCTGTAACCCTTGGCACAGGTAACTCTTTGGGGCCGGAGGGTCCGAGTGTCGACATCGGTACTTCTGTTGGCAAGGGTGTTTCTACTGTGTTTGACAGGAACTCTAGAACAAAGCTTTCTCTGATAGCTGCAGGATCAGCTGCTGGCATCTCATCTGGGTTTAATGCTGCAGTTGCTGGCTGTTTCTTTGCTGTTGAGTCAGTCCTGTGGCCATCTCCTGCAGATTCAACTTTTTCTCTCACAAACACTACTTCAATGGTTATCTTAAGTGCTGTAATAGCTTCTGCTGTTTCACAAGTTGGTCTTGGGGTTGAACCAGCATTCAAGGTTCCCGAGTACGATTTTCGCTCGCCGAGTGAGCTTCCACTGTATCTGTTGTTGGGTGCACTCTGTGGCTTGGTTTCATTGAGCTTTTCTAAATGCACATCTTATATGCTTGCAACCGTCGACAAAGTTCATAAGGACTTCGGTGTGTCGAGGGCTTTGTTTCCTATTCTAGGTGGCTTCTCTACTGGACTGATAGCCTTGGCATACCCTGAAATTCTGTACTGGGGGTTTGAGAATGTTGATCTTTTGTTGGAATCTCGGCCATTTGTGAAACCCCTCTCAGCTGAATTGTTGGCCCAGCTTGTTGTTGTCAAGATTTTGGCGACCTCTTTGTGTAGAGCATCTGGACTAGTAGGAGGGTACTATGCGCCATCTCTGTTTATTGGCGCTGCAACTGGAATGGCATATGGGAAATTCATTGGCATTGCACTTTCTGAGCCCAACACAGCGATCGACTTCTCCATTTTCGAAGTGGCGTCGCCTCAAGCTTATGGATTGGTTGGAATGGCTGCTACTCTTGCTGGGGTTTGTCAGGTGCCTCTTACTGCTGTTTTGTTGCTTTTTGAGCTGACACAGGACTACCGAATTGTTCTTCCTTTACTCGGAGCTGTCGGGGTGTCGTCGTGGTTAACATCCGGGCAGAAAAGGAAAAGGAGTTCCCAGAAGACAAAGAAACTCCCTCTAGGGAAAGTTCTTAGTACTCAACAATCTACAACATATGACAGTAATGCAAATGACCAATCTTCCAATTATGCAGATGATGGAAAGGAAACTTACCCAAATGATCTCTGTGAAATTGAAAGCTCACTTTGTGCATATGATTCTGATAGCGAAATTGTAGAGTTAGAAAGGAAGATATGTGTGTCTGAAGCCATGACAACAAGATACGTTACTGTCTTCATGGACACTTTCCTTATAGAAGCAGTAGATCTCATGCTTGCAGAGAAGCAGTCCTATGCATTGATTGTGGATGAAGAGAATACTTTGATTGGCATATTGGCCCTTCAAGACATTCAAAAGTTAAGCAAAAATGGGCTAGTAGTTTCTGAGGTTTGCTCACTGGATGGCGAGATATGTCGAGTACCATGGACAGCAACTCCGAGTATGGACATTCTTACAGCTAAAACGGTTATGAAGAATCTTGGTGTGAGCCAAGTTCCAGTGGTGAAAGATCAGATGGGTTACCTTGTGGGTGTTCTAGACTTGGAGTGTATTGATCTCACTTGCAGAATTCTTGCAACAAGAGAATCCCTCGGCTGA 2274 45.34 MTVYTMGAIDSIGIRLNNNAHHYPLSSSISAPNDCCSSYGRFLGLRFSLRPKQTGFRFRSFCSLPGSGESESPVPGSSDGRFSRGEGSPSATGIKWRKEEEEEEDNTEEDEEEEGIPSGIGSSTIISSCFVGVLTGIGVVLFNNAVHELRDFFWDGIPNRGASWLREMPVEETWKRVILVPACGGFLVSFLNLLREATDNDPSTKLGVPVSISNQFRAALQPFLKAVAASVTLGTGNSLGPEGPSVDIGTSVGKGVSTVFDRNSRTKLSLIAAGSAAGISSGFNAAVAGCFFAVESVLWPSPADSTFSLTNTTSMVILSAVIASAVSQVGLGVEPAFKVPEYDFRSPSELPLYLLLGALCGLVSLSFSKCTSYMLATVDKVHKDFGVSRALFPILGGFSTGLIALAYPEILYWGFENVDLLLESRPFVKPLSAELLAQLVVVKILATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGIALSEPNTAIDFSIFEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGVSSWLTSGQKRKRSSQKTKKLPLGKVLSTQQSTTYDSNANDQSSNYADDGKETYPNDLCEIESSLCAYDSDSEIVELERKICVSEAMTTRYVTVFMDTFLIEAVDLMLAEKQSYALIVDEENTLIGILALQDIQKLSKNGLVVSEVCSLDGEICRVPWTATPSMDILTAKTVMKNLGVSQVPVVKDQMGYLVGVLDLECIDLTCRILATRESLG 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9325589 9332894 + Cp4.1LG05g13220.1 Cpe05g01327 470532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01327 757 Gene3D - 624 744 IPR046342 -
Cpe05g01327 757 Pfam CBS domain 626 678 IPR000644 -
Cpe05g01327 757 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 110 756 - -
Cpe05g01327 757 SMART cbs_1 699 748 IPR000644 -
Cpe05g01327 757 SMART cbs_1 633 681 IPR000644 -
Cpe05g01327 757 SUPERFAMILY CBS-domain pair 621 741 IPR046342 -
Cpe05g01327 757 MobiDBLite consensus disorder prediction 66 120 - -
Cpe05g01327 757 Pfam Voltage gated chloride channel 222 549 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe05g01327 757 CDD CBS_pair_voltage-gated_CLC_euk_bac 630 744 - -
Cpe05g01327 757 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 110 756 - -
Cpe05g01327 757 MobiDBLite consensus disorder prediction 572 593 - -
Cpe05g01327 757 ProSiteProfiles CBS domain profile. 630 688 IPR000644 -
Cpe05g01327 757 MobiDBLite consensus disorder prediction 102 116 - -
Cpe05g01327 757 Gene3D Clc chloride channel 118 564 - -
Cpe05g01327 757 MobiDBLite consensus disorder prediction 572 594 - -
Cpe05g01327 757 CDD Voltage_gated_ClC 132 546 - -
Cpe05g01327 757 PRINTS Chloride channel signature 500 516 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe05g01327 757 PRINTS Chloride channel signature 518 537 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe05g01327 757 PRINTS Chloride channel signature 225 244 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe05g01327 757 PRINTS Chloride channel signature 276 295 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe05g01327 757 PRINTS Chloride channel signature 455 475 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cpe05g01327 757 SUPERFAMILY Clc chloride channel 125 550 IPR014743 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01327 - - - mcha:111011346 1109.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01327 Cpe-Chr5:9325589 Cpe08g00811 Cpe-Chr8:6465714 3.98E-110 dispersed
Cpe05g01327 Cpe-Chr5:9325589 Cpe14g00819 Cpe-Chr14:6560664 1.25E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01327 Cpe_Chr05 FPKM 10.567028 12.424627 2.756139 2.553274 12.107329 12.872966 14.20618 3.748247 3.88785 3.911141