Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01328 ATGGAGACTGGAGGCAATTCATTACCATCTGGGCCTGATGGCGTGAAGAGGAAAGTCAGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAAGGTCACCCAATGAAGCCGCATCGCATCCGAATGACGCATGCCCTTCTCGCTCATTATGGCTTACTCCAGCATATGCAGGTTTTCAAGCCTGTTCCTGCTCGGGATAAAGTCCTTTGCAGATTTCACGCTGATGATTATGTGGCGTTTCTTAAAAGTATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCGGTCTTTGATGGCCTCTACTCTTTCTGTCAAACTTATGCTGGTGGATCTGTTGGTGGTGCTGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTCAATTGGTCTGGTGGGCTACACCATGCGAAGAAGTGCGAAGCATCTGGATTTTGTTATGTCAATGATATTGTTCTGGCGATACTGGAGCTTCTTAAACATTATGAGCGTGTTTTATATGTTGACATCGATATCCACCATGGAGATGGTGTGGAGGAGGCTTTTTACACAACCGACAGGGTCATGACTGTATCATTCCACAAATTTGGAGATTATTTTCCTGGTACAGGTGATATAAGAGACGTTGGTTATGGAAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGACGATGGAATTGATGACGAGAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGAGCTGTTGTTCTCCAATGTGGGGCTGACTCTCTTTCTGGAGATAGGCTTGGATGCTTTAACTTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTGTTACTTGGTGGGGGTGGCTACACCATCCGTAATGTTGCTCGATGCTGGTGCTATGAGACAGGAGTTGCACTTGGGATGGAGGTTGATGACAAAATGCCACAACATGAATATTACGAGTATTTCGGTCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTGGAAGAAATACAGGGGAAGCTGCTTGATTACCTCTCAAGGCTTCAGCATGCACCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACCGAACTCCCAGAGGCGGATGAAGATCGGGAGGACAAGGATGAGAGACGGGATCCAGATTCAGATATGGAAGTTGATGATGAGAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACGGTTGAGTCTGAAATCAAAGATCCGGAAGTTAATGTCGATAGTACTAGAGGTTTAGAAAAAGCAGCAGCAGCCGAGGCTACAAGCGCAAAGGCTTTAGACATCGGTTCTCTCAAAATCGAAGACCCAGGCGTAAAGCTTGAAGAAACCAGCAAGCAGAATGACCAAATGTTACCCTAA 1482 44.26 METGGNSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPVPARDKVLCRFHADDYVAFLKSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHKVCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKHYERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGYGKGKYYSLNVPLDDGIDDESYHFLFKPIMGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNTHQMLEEIQGKLLDYLSRLQHAPSVQFQERPPDTELPEADEDREDKDERRDPDSDMEVDDERKPIPSRVKRETVESEIKDPEVNVDSTRGLEKAAAAEATSAKALDIGSLKIEDPGVKLEETSKQNDQMLP 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9331548 9336670 - Cp4.1LG05g13280.1 Cpe05g01328 470533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01328 493 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 MobiDBLite consensus disorder prediction 395 449 - -
Cpe05g01328 493 PIRSF HDAC_I_euk 5 463 IPR003084 GO:0004407|GO:0016575
Cpe05g01328 493 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Cpe05g01328 493 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Cpe05g01328 493 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Cpe05g01328 493 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Cpe05g01328 493 Pfam Histone deacetylase domain 36 324 IPR023801 -
Cpe05g01328 493 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
Cpe05g01328 493 PANTHER HISTONE DEACETYLASE 19 3 489 - -
Cpe05g01328 493 MobiDBLite consensus disorder prediction 385 493 - -
Cpe05g01328 493 CDD HDAC_classI 22 327 - -
Cpe05g01328 493 PANTHER HISTONE DEACETYLASE 3 489 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01328 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101214717 966.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00295 Cpe05g01328 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01577 Cpe-Chr4:12326760 Cpe05g01328 Cpe-Chr5:9331548 2.39E-153 dispersed
Cpe05g00422 Cpe-Chr5:2408829 Cpe05g01328 Cpe-Chr5:9331548 2.45E-176 dispersed
Cpe05g01328 Cpe-Chr5:9331548 Cpe16g00795 Cpe-Chr16:7775611 0 dispersed
Cpe16g00371 Cpe-Chr16:5374536 Cpe05g01328 Cpe-Chr5:9331548 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g328 . . . . . Bpe12g00163 . . . Cmo11g01384 Cma02g00311 Cma20g00695 Car02g00192 . . Cpe04g00295 . Bhi05g01087 . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . . . . Csa07g00228 . Cme01g00073 Blo04g00616 Blo13g00456 . . Bpe15g00768 . Bma03g00653 Bma08g00825 . Cmo02g00305 Cmo20g00687 . . . . . Cpe05g01328 . . . . . . . Cla02g01045 Cam02g1113 Cec02g1118 Cco02g1152 Clacu02g1099 Cmu02g1059 Cre02g1367 Lsi11g01321 . Chy01g00080 Cme11g01011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01328 Cpe_Chr05 FPKM 4.987362 4.005548 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0