Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01329 ATGGCAATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGGCATCTGATGGAGAATCAAATGCATCAAACGCTCAGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAATCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATCGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAAGTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAACACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCAAAGTTGATAGAGCATTACGACCGAATGGGTTACCGAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCATTGGGTTCCATCACAGAGGTTGTTCAGACTGTGAAGAACCCTCGATCTAATAATCGAGCTATGAGTCACGACATTACCAGGAAAAAAGAAGAGTTGGAGAAGTTTAATTTTGACTCTGTTCTTCCCAAGTCAGTTGCAGCTGCAAATTATTCACCGGGTAGACAGACTCCTCAACAGGACCTCACAGATGATGGCTTAGGCAAGAAATCTAGGTTATCAAGTCGAGTTTCTTTAACGGGGCAAAAAGGGAAATCTATTAGCAGTTCAAGAAATCTTGAAGTAACAGCCCTTGAACCAGAAATTTTGATGACCGATGAAATAGAACGGACTGATAGTTTGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAGGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAACTTCGTCATTTCTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTCGAGTTGACAGAATATACACGTGAAGAAATTTTGGGACGGAACTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGATACCGTCTCGAAGATTAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACGGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATCGGTGTACAACTAGATGGAAGTGGTCGTGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGCAGCAGAGTGCCATGCTGGTTAGAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGGTAAGAGACCAGAAGATTTGTGGGCAATTTATTCTCAACCAGTCTTCCCAAGGCCTCACAAAAAGCATAGTTTTTCTTGGACTGCTATACAAAAGATTACTCAACGTCGTGAAAAAATTGGACTCCAACATTTTAAGCCAATCAAACCACTGGGTTATGGAGACACTGGCAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAACACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAGTCGTTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATATCAGACTTTTGCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAGCCAATGAAATTGTTTAAAGAGGATTCTGCTAGATTCTACGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATCTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCACGTTACGCTTGCTGACTTCGATTTATCGCTTATGACAGCCTGCAAACCACAGATTGTGAAGTATCCATTGCCTCGCGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCGATGACACAGTCGAACTCATTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGTTTTTATCAAAAGTCTTATGGTATTTTTCAATCCTACTGATTTACATACACTCTTCCAGGTAAGTCTTGCAGCAAGGCAGCTGATCAACGCATTGCTACAACGAGACCCTGCCCGACGTTTAGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGATGCATGGTCCCACCACCATTAGAATCACCTCTTAACCTTACTGGGAAAGATGAATCTGCCAAGAACGTAAACTGGGAAGATGATGGAGTGCTTACTACAATGGATATGGATCTTTTTTGA 2691 44.07 MAMEDKRGISSNGPLDKWMASDGESNASNAQENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTITPIKDDNGNTIKFIGMQVEVSKYTEGKVDRALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKNPRSNNRAMSHDITRKKEELEKFNFDSVLPKSVAAANYSPGRQTPQQDLTDDGLGKKSRLSSRVSLTGQKGKSISSSRNLEVTALEPEILMTDEIERTDSLDRAERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGRVEPLQNRLSETAEQQSAMLVRATAENVDEAVRELPDANLVRDQKICGQFILNQSSQGLTKSIVFLGLLYKRLLNVVKKLDSNILSQSNHWVMETLAGTSELYALKAMEKSTLLNRNKVHRACIERQVVALLDHPFLPTLYTSFETPTHVCLISDFCPGGELFALLDKQPMKLFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTACKPQIVKYPLPRGRRRSRSQPPPVFVAEPMTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALVFIKSLMVFFNPTDLHTLFQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLNLTGKDESAKNVNWEDDGVLTTMDMDLF 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9339804 9351985 + Cp4.1LG05g13240.1 Cpe05g01329 470534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01329 896 SUPERFAMILY Protein kinase-like (PK-like) 600 877 IPR011009 -
Cpe05g01329 896 SMART pas_2 114 183 IPR000014 -
Cpe05g01329 896 SMART pas_2 386 455 IPR000014 -
Cpe05g01329 896 Gene3D Phosphorylase Kinase; domain 1 600 867 - -
Cpe05g01329 896 PANTHER BNAA02G07840D PROTEIN 85 895 - -
Cpe05g01329 896 MobiDBLite consensus disorder prediction 86 101 - -
Cpe05g01329 896 SUPERFAMILY PYP-like sensor domain (PAS domain) 403 499 IPR035965 -
Cpe05g01329 896 MobiDBLite consensus disorder prediction 1 50 - -
Cpe05g01329 896 TIGRFAM sensory_box: PAS domain S-box protein 139 229 IPR000014 -
Cpe05g01329 896 TIGRFAM sensory_box: PAS domain S-box protein 410 499 IPR000014 -
Cpe05g01329 896 Gene3D PAS domain 126 297 - -
Cpe05g01329 896 SMART serkin_6 593 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01329 896 SUPERFAMILY PYP-like sensor domain (PAS domain) 133 225 IPR035965 -
Cpe05g01329 896 ProSiteProfiles PAC domain profile. 186 240 IPR000700 -
Cpe05g01329 896 MobiDBLite consensus disorder prediction 79 108 - -
Cpe05g01329 896 ProSiteProfiles PAC domain profile. 458 512 IPR000700 -
Cpe05g01329 896 MobiDBLite consensus disorder prediction 309 323 - -
Cpe05g01329 896 Pfam PAS domain 407 499 IPR000014 -
Cpe05g01329 896 Pfam PAS domain 133 229 IPR000014 -
Cpe05g01329 896 ProSiteProfiles Protein kinase domain profile. 576 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01329 896 MobiDBLite consensus disorder prediction 309 348 - -
Cpe05g01329 896 MobiDBLite consensus disorder prediction 332 348 - -
Cpe05g01329 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Cpe05g01329 896 ProSiteProfiles PAS repeat profile. 112 185 IPR000014 -
Cpe05g01329 896 PANTHER FLIPPASE KINASE 1-RELATED 85 895 - -
Cpe05g01329 896 Pfam Protein kinase domain 599 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01329 896 ProSiteProfiles PAS repeat profile. 384 457 IPR000014 -
Cpe05g01329 896 CDD PAS 407 499 IPR000014 -
Cpe05g01329 896 SMART pac_2 461 503 IPR001610 -
Cpe05g01329 896 SMART pac_2 189 231 IPR001610 -
Cpe05g01329 896 Gene3D Transferase(Phosphotransferase) domain 1 659 866 - -
Cpe05g01329 896 CDD PAS 139 228 IPR000014 -
Cpe05g01329 896 Gene3D PAS domain 373 537 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01329 Cpe15g00667 CCT
Cpe05g01329 Cpe16g00373 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01267 Cpe-Chr1:7606062 Cpe05g01329 Cpe-Chr5:9339804 2.26E-32 dispersed
Cpe05g01329 Cpe-Chr5:9339804 Cpe16g00570 Cpe-Chr16:6489886 0 dispersed
Cpe01g01442 Cpe-Chr1:8635003 Cpe05g01329 Cpe-Chr5:9339804 2.21E-25 transposed
Cpe15g00667 Cpe-Chr15:7292808 Cpe05g01329 Cpe-Chr5:9339804 1.08E-16 wgd
Cpe16g00373 Cpe-Chr16:5385784 Cpe05g01329 Cpe-Chr5:9339804 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62441 PF00069 Pkinase 1.70E-42 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01329 K20715 - csv:101215355 1385.55