Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01342 ATGAGCGGCCGTAGAGAAGTATATGTTCAGTTATCTCCTTCAACCTACCGTCACATTTCGACATTTCGACATTTCGACATTTCGACAATTCGATTCGACGAATCGACGAAACAAATCCTTCGAATTCGAAGCTTTCGATTCCCTCTGGAAAACAAGAGGACTGAACACGAACTAAGAATCTCCATGGCTTTAAACCTTCGCCAGAAGCAAACAGAATGTATAATTCGAATGTTGAATTTGAACCAGCCGGTGAACTCAACATCGACCGCGAACGAAGAGGTTTACAAGATCTTGATCTTCGACAGATTTTGCCAGAACATACTGTCGCCTTTGATTCATGTCAAGGATCTTCGCAAACATGGGGTCACTCTTTATTTTCTCATCGACAAGGATCGGAAACCTGTTCACGATGTGCCTGCTGTCTATTTCGTCCAACCGAGTAAGATCAATATAGATAGAATTGTTGCTGATGCTTCTCGTTTCCTCTATGATAGCTTTTACTTAAACTTCTCTTCTTCGATTCCTCGTCCTCTCCTTGAGGATCTCGCATCTGGAACTCTGAATTCAGATTCGGTTCAACGAATCGCGAAGGTGCACGACCAGTATTTAGAATTCGTTACATTGGAGGATAATTTGTTTTCGTTAGCTCAGAAGAGTATATATGTTCAATTGAACGATCCCTCTGCTGGAGATCGTGAAATTGAGGAGATTATAGAGAGAATCGTTAGTGGATTGTTTAGTGTTTTGGCTACGCTGGCTGTAGTGCCTGTTATTCGATGCCAACGAGGAGGGCCAGCAGAAATGGTTGCCTCGGCATTGGATCAGAGGTTGAGAGATCATTTGTTGTCGAAGAACAATTTGTTTACAGAGGGTGGGGGCTTTGCTAGCTCATTCCAGCGTCCGATTCTGTGTCTGTTCGATCGCAATTTCGAATTATCTGTAGGAATACAGCATGATTTTAGGTACAGACCTTTAGTTCATGATATTCTAGGATTGAAACTGAATAGATTAAGCGTGCAGGGTGAAAAGGGTGGGATGAAATCCTATGAATTAGATAGTTCTGACTCATTTTGGGTGGCAAATGGATCTTTGGAGTTTCCAGAAGTTGCAGTGGAGATTGAAACTCAGTTGAATAAGTATAAGAAGGACGTTGATGAAGTGAATAGAAGAACTGGTGGGACTGATGGAGCTGAGTTTGATGGAACAAATTTGATTGGGAACACAAAGCATTTGATGAATGCTGTGAATTCATTGCCTGAATTGACCGAACGGAAGCAAATTATCGATAAGCATACGAACATTGCCACTGTATTGTTGGGTGAGATCAAGGAGAGGTCTCTTGATTCTTATGCTAAAAAGGAGAACGACATGATGGCTCGAGGTGGTATTGATCGGAACGAGCTCTTGTCTGTGCTAAAAGGGAAGGGTACGAAGACGGATAAGCTTCGATTCGCTGTTATATATCTGATCTCTTCGGAAAGTATAAACCAATCTGAAGTGGAAGCTGTAGAAGCTGCTCTGAGGGAATCAGAAGTTGATACTAGTGCATTTCAATATGTTAAGAAGATCAAGTCATTGAATGTCTCGTTCTCATCAGCAAATTCAGCTAGCAGAAGCAACATTGTGGATTGGGCTGAAAAACTCTATGGACAGTCAATTAGTGCAGTGACTGCTGGTGTTAAAAATCTCTTGTCTAGTGATCGGCAGCTTGCTCTAACTAGGACGGTCGAGGCGTTGATGGAAGGAAAACCGAATCCTGAGATTGATACGTTCCTTGCGTTCGATCCTCGTGCTCCAAAGTCGAGCTCTGGAACCAGTGGCAGCCATCTAAAAGGACCATTCAGGGAAGCAATTGTATTCATGATTGGAGGCGGTAACTATGTCGAGTACGGGAGCTTGCAAGAGCTGGCAATGAATCAGCAGACAGTCAAGCATATAATATACGGTAGCACCGAGATCCTCACCGGAGCCGAGTTCGTGGAGCAGCTATCGCTGTTGGGGCAGAAGATGGGACTTGGCAACGTTGCTCCGCCCCCTCCTCCAGGTCCTTAA 2052 43.66 MSGRREVYVQLSPSTYRHISTFRHFDISTIRFDESTKQILRIRSFRFPLENKRTEHELRISMALNLRQKQTECIIRMLNLNQPVNSTSTANEEVYKILIFDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPSKINIDRIVADASRFLYDSFYLNFSSSIPRPLLEDLASGTLNSDSVQRIAKVHDQYLEFVTLEDNLFSLAQKSIYVQLNDPSAGDREIEEIIERIVSGLFSVLATLAVVPVIRCQRGGPAEMVASALDQRLRDHLLSKNNLFTEGGGFASSFQRPILCLFDRNFELSVGIQHDFRYRPLVHDILGLKLNRLSVQGEKGGMKSYELDSSDSFWVANGSLEFPEVAVEIETQLNKYKKDVDEVNRRTGGTDGAEFDGTNLIGNTKHLMNAVNSLPELTERKQIIDKHTNIATVLLGEIKERSLDSYAKKENDMMARGGIDRNELLSVLKGKGTKTDKLRFAVIYLISSESINQSEVEAVEAALRESEVDTSAFQYVKKIKSLNVSFSSANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALTRTVEALMEGKPNPEIDTFLAFDPRAPKSSSGTSGSHLKGPFREAIVFMIGGGNYVEYGSLQELAMNQQTVKHIIYGSTEILTGAEFVEQLSLLGQKMGLGNVAPPPPPGP 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9444374 9446567 - Cp4.1LG05g13410.1 Cpe05g01342 470547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01342 683 Pfam Sec1 family 96 662 IPR001619 GO:0016192
Cpe05g01342 683 PANTHER SEC1 FAMILY TRANSPORT PROTEIN SLY1-LIKE 64 671 - -
Cpe05g01342 683 Gene3D - 64 197 IPR043154 -
Cpe05g01342 683 SUPERFAMILY Sec1/munc18-like (SM) proteins 62 669 IPR036045 -
Cpe05g01342 683 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 64 671 IPR001619 GO:0016192
Cpe05g01342 683 Gene3D - 208 665 IPR027482 -
Cpe05g01342 683 PIRSF VPS45_Sec1 64 674 IPR001619 GO:0016192
Cpe05g01342 683 Coils Coil 370 390 - -
Cpe05g01342 683 Gene3D - 445 570 - -
Cpe05g01342 683 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 319 563 IPR043127 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01342 K19998 SCFD1, SLY1; sec1 family domain-containing protein 1 - csv:101220905 1128.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01342 Cpe16g00345 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01342 Cpe-Chr5:9444374 Cpe17g00312 Cpe-Chr17:2116966 3.50E-20 dispersed
Cpe16g00345 Cpe-Chr16:5233611 Cpe05g01342 Cpe-Chr5:9444374 0 wgd
Cpe04g00627 Cpe-Chr4:6496548 Cpe05g01342 Cpe-Chr5:9444374 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002622 0 2 2 1 1 2 3 2 2 2 2 2 3 2 1 3 2 2 3 2 2 2 2 1 2 2 2 2 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01342 Cpe_Chr05 FPKM 7.155785 6.458366 8.032475 6.587348 6.509837 8.126855 8.039136 4.223926 6.113874 6.786246