Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01357 ATGGATTCGGATGCGTCCGGTGGATCGGCGCCGTCGTTATTGCCGTCGCCAGAAATCTCTCCGGCCGTGGAGTCCGACGGTCGGAGTGCAGCAGCTTCCGATAGCTCCGGAAAGAACCAGAGAATCGGAGATGGAGGAGGTAATAAGCCAACTCCGCCACCTGTTGGCGACGGTGCTTCTCGCCGGATTCAGCTACGCCGTGGTTATTCCGACCATAGTGGACGTAACCACCGACGCTCTGTGTCTCGGCCACCAAGACCAGTGTCCCCTCGTCTTCTACCTCACCGGCTTCCAAGACGCACGATATTGGCATTTGGAAGAAGTAAGAGTTTCTTCTACGCATACTATGTGGTGAGGACTTTTACCGCCGCGCTCACCGGCGGCACCTTAAGCTCCCTCGCTCTCGCTTACGCGGCTGACAAAGTTCTAGTGGATCAGCGATTATCTGCATTCGGAATCGTATCGGCAGTTTTTTCTGGCTCTTACTTGTGCGGAAACTTGGCGGCTCGATTCCTTTCAATCGACTCGATCTTTCAGGTCGCTGTTTGCGCGTCGTTGTTTACGATTGCGTATGTGAGGATTTTTCTAGAAGAAAGTGTTTCGAATAAAATGGATCTGTTGTCTCGGCCGATTTTGAAGACGGAGGAAGACTGCGACGGTGCCGATAATGTTCCTCGATTGCCTCCGTCTACGGCCAAAACAATCCCCTCCTTCAAGGAAATCACTTCGTTGCTTGGAAGAAGCTCAACATTTTCGCGAACGTTAGCAGTCTGTTTCTTCAACAGCATAGCTTTGGGTTGGACACAAGCATCGATATTGTACTACTTCAAGGCTCGTTTTCTCTCCAACAAAGATCAATTTGCTAGCTTATTGATACTCATTGGGGCTTTTGGAGCTATTTCGCAGGTACGTTTTTTCAACGTCAAATTATAA 933 50.16 MDSDASGGSAPSLLPSPEISPAVESDGRSAAASDSSGKNQRIGDGGGNKPTPPPVGDGASRRIQLRRGYSDHSGRNHRRSVSRPPRPVSPRLLPHRLPRRTILAFGRSKSFFYAYYVVRTFTAALTGGTLSSLALAYAADKVLVDQRLSAFGIVSAVFSGSYLCGNLAARFLSIDSIFQVAVCASLFTIAYVRIFLEESVSNKMDLLSRPILKTEEDCDGADNVPRLPPSTAKTIPSFKEITSLLGRSSTFSRTLAVCFFNSIALGWTQASILYYFKARFLSNKDQFASLLILIGAFGAISQVRFFNVKL 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9548825 9553909 - Cp4.1LG05g13560.1 Cpe05g01357 470562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01357 310 SUPERFAMILY MFS general substrate transporter 109 303 IPR036259 -
Cpe05g01357 310 Pfam Major Facilitator Superfamily 102 302 IPR011701 GO:0022857|GO:0055085
Cpe05g01357 310 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 101 306 - -
Cpe05g01357 310 Gene3D MFS general substrate transporter like domains 101 308 IPR036259 -
Cpe05g01357 310 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 101 306 - -
Cpe05g01357 310 MobiDBLite consensus disorder prediction 1 93 - -
Cpe05g01357 310 MobiDBLite consensus disorder prediction 64 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01357 - - - bhj:120088371 228.794
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01357 Cpe15g00610 CCT
Cpe05g01357 Cpe15g00610 ECH
Cpe05g01357 Cpe16g00333 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01357 Cpe-Chr5:9548825 Cpe11g00274 Cpe-Chr11:1470647 2.27E-23 dispersed
Cpe15g00610 Cpe-Chr15:6797626 Cpe05g01357 Cpe-Chr5:9548825 9.68E-45 wgd
Cpe16g00333 Cpe-Chr16:5146556 Cpe05g01357 Cpe-Chr5:9548825 6.30E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g211 . . . . . Bpe12g00132 . . Cmo19g00768 . . . . Car20g00636 . . Cpe15g00610 Bhi05g01676 Tan02g0650 . . Hepe02g0405 . . Cla02g00405 Cam02g0410 Cec02g0410 Cco02g0427 Clacu02g0413 Cmu02g0409 Cre02g0744 Cone12ag1249 . . . . Csa07g00124 . Cme01g01232 Blo04g00585 Blo13g00494 Bda15g01021 Bda14g00627 Bpe15g00800 . . . . . . . Cma19g00755 . Car19g00589 Cpe16g00333 Cpe05g01357 . . . . . . . Cla02g01087 Cam02g1163 Cec02g1162 Cco02g1210 Clacu02g1155 Cmu02g1117 Cre02g1420 Lsi11g01219 . Chy01g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014030 0 6 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 2 3 3 0 1 2 2 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01357 Cpe_Chr05 FPKM 4.705436 5.44978 8.950558 8.575772 9.215405 7.943016 7.957093 0.417789 0.382532 0.433333