Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01365 ATGGCGCAACCGGATTCTGTGGACAAGGAGTCTCTTACGGATACTTGCGATAGTTACATGAATAGGGATGATAGGGGGTTTTTACATGGTGATTTTGTTGCTGCTGTTTCCAATCCTACAGGGCAATCAGGTGTTGTGGTAGATGTAAATATCTCTGTTGATTTGTTAGTTCCTGATGGATCAGTTGTGAAAAATATATCATCTAAGGACTTGATACGTGTGAGAGATTTTGCAGTGGGGGATTATGTGGTCCTTGGTCCGTGGTTGGGTAGAATTGATGATGTCTTGGATAATGTGACTGTGATGTTTGATGATGGCTCCAAGTGTAAAGTCACAAAGGCAGAGCCATCGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAGCTTTCCTTACTATCCTGGCCAGCGGCTGAGGGCAAGTTCTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGATTGCAAGGTACTGTCACTAAAGTTACAGTTGGATCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCTTCTACCACCCCAGCTGAAGAACAGAGTCCAAAGAACTTGAGACTATTAACTTGTTTTTCACATGTGAATTGGCAATTGGGTGACTGGTGTCTTCTTCCTTCCTCATTCTCCTCTGGCTCGACTAAGGACTCATCACAAACAGAACTTCCTGATTCAGTAACCAATACGTTAGATTATGCACAAACAGTGGGAGCATGCGATTCAGAGGATACCGTGGTAGATGAATTAACTGGGAGAACTGAATCCACTGATCTTGACTCCATTAGTGCATGTAATGGAAATTATAGGGATCCAGAATGTAATATTTTGCCGGAATCTAGTAGTTCTAGAGCAACAAAGGAGAATACCCATGAGACTTGGCCTCTCCATCGCAAAAAAATTCGTAAAGTTGTCATCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCACTTTTAATCATCAATACTACGACAAAAGTTGATGTTGTATGGCAGGATGGCCGGGCAGAACTTGTGCTGGATTCAACAGGCTTGATTCCAATTAATCCAGGTGATCATGAATTTGTTCCAGAACAGTATGTTGTTGAGAAGGCCTCTGATAATGATGATGATGTTACGGAAAGCAGGCGAGTTGGAGTTGTGAAAAGTGTTCATGCAAAGGAGCGAACAGCCTGTGTAAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAGTTGTTAGTGTGTATGAGCTAGAAGGGCATCCAGATTATGACTACTGTTACGGTGATGTTGTTGTTCGTTTGTCACCTGTTTCTGATTCTATAGAAGCTCTGTCTTCTGAAAACACTACTGAAGAATTAAATCATCAAAGTTCAACCAATGGGGTGATGAGTTGTACAGAAAAGGTTTCAGGAAGCCTGAAAATAGAATATCCATCAAGTAGTGATGATTGCTTTGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACGAATCTTAAGAATGGTGATATTGAAGTTTTTTGGGCGAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGACGATGAATCAATTGGTGCTGGAAGTGAAGTAAGTAACGGTGCTGCAAGTTGGGAAACAGTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAATGGATGTTGAGAACGCCAAGGAGGATATTGAGCTGCAAGATACTGGTGTGGATTCTGAAGAGGAAGAGAATGAACAGCATAATTCAGGAAGAAGTCTAGCTCTTTCTGTTCCACTTGCTGCATTTCGATTTGTTACTAGATTGGCTACTGGATTATTCTCACGAGGACCAAGAAATCGAGATTCAATGGATTTGGATTCCCACAGTGAAAGTGATACTCAATCCTTGGAAATTCAAGCTTTGGAGGAAATAGATTCTGGGCTTCAGTCTAGCTCTCTTAAATCCAATTCTTTTACTGCCTCTGATTTGAACCCTGACTGTGGAAGAGGAGAGGACGATGATGCCTCAGAGCCATCAAAAGTGTTAGTATCAGCAGAAGCTTCAAGCAACCTGAGGACTGCTCAATCAGATGGGTCAGCATGCCATGAGGATGGCACCTGCAGCTTCAAGGGCTTTGATATCGTTAAAGATCCTTTGGACCATTATTTTCTTGGTACAAATGGACAAACTATTAACGGAAGGAAATGGCTTAAGAAAATCCAGCAAGATTGGACTATCCTCCAGAATAATCTTCCAGATGGGATATACGTTCGAGTCTATGAGGATCGAATGGACCTTTTAAGAACCGTCATTGTTGGGGCCTATGGGACCCCTTACCAAGATGGCCTTTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCCGACGTTCCACCAGACTTCGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTACATCCTGAAGGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCTCTCACAGAAGATGCCTCTATAAGAGAAGAAAGCGATCCCAACTCCACGTCAGTCGGGTTTAAGCTTATGCTCGCTAAGATTGTTCCGAAGCTCTTCTCGTCGTTGAACGAAGTCGGAGCTGATTGTCGCGATTTTAAGCATTTTCAACAGTTGTAG 2751 42.13 MAQPDSVDKESLTDTCDSYMNRDDRGFLHGDFVAAVSNPTGQSGVVVDVNISVDLLVPDGSVVKNISSKDLIRVRDFAVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPSRLKPVSKNILEDASFPYYPGQRLRASSSTVFKNSKWLSGLWKPNRLQGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQSPKNLRLLTCFSHVNWQLGDWCLLPSSFSSGSTKDSSQTELPDSVTNTLDYAQTVGACDSEDTVVDELTGRTESTDLDSISACNGNYRDPECNILPESSSSRATKENTHETWPLHRKKIRKVVIRRDKKARKKEENFERALLIINTTTKVDVVWQDGRAELVLDSTGLIPINPGDHEFVPEQYVVEKASDNDDDVTESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDIEEVVSVYELEGHPDYDYCYGDVVVRLSPVSDSIEALSSENTTEELNHQSSTNGVMSCTEKVSGSLKIEYPSSSDDCFDFSDLSWVGNITNLKNGDIEVFWANGMVSTVGPQAIYVVGRDDDDESIGAGSEVSNGAASWETVDDDDDDDDDDDDDDDDDDDDDDEMDVENAKEDIELQDTGVDSEEEENEQHNSGRSLALSVPLAAFRFVTRLATGLFSRGPRNRDSMDLDSHSESDTQSLEIQALEEIDSGLQSSSLKSNSFTASDLNPDCGRGEDDDASEPSKVLVSAEASSNLRTAQSDGSACHEDGTCSFKGFDIVKDPLDHYFLGTNGQTINGRKWLKKIQQDWTILQNNLPDGIYVRVYEDRMDLLRTVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPDFEELVKEHFRRRGYYILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLAKIVPKLFSSLNEVGADCRDFKHFQQL 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9604139 9612009 + Cp4.1LG05g13630.1 Cpe05g01365 470570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01365 916 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 769 916 IPR000608 -
Cpe05g01365 916 MobiDBLite consensus disorder prediction 569 601 - -
Cpe05g01365 916 MobiDBLite consensus disorder prediction 551 626 - -
Cpe05g01365 916 SUPERFAMILY UBC-like 755 834 IPR016135 -
Cpe05g01365 916 MobiDBLite consensus disorder prediction 681 697 - -
Cpe05g01365 916 MobiDBLite consensus disorder prediction 681 713 - -
Cpe05g01365 916 MobiDBLite consensus disorder prediction 647 668 - -
Cpe05g01365 916 Gene3D Ubiquitin Conjugating Enzyme 735 836 IPR016135 -
Cpe05g01365 916 Coils Coil 597 617 - -
Cpe05g01365 916 Pfam Ubiquitin-conjugating enzyme 774 836 IPR000608 -
Cpe05g01365 916 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 833 915 - -
Cpe05g01365 916 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 23 833 - -
Cpe05g01365 916 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 833 915 - -
Cpe05g01365 916 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 23 833 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01365 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 1330.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01365 Cpe-Chr5:9604139 Cpe10g00194 Cpe-Chr10:1130257 6.82E-54 dispersed
Cpe05g01365 Cpe-Chr5:9604139 Cpe02g00703 Cpe-Chr2:4443901 3.84E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
Vvi12g297 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1509 Cone12ag1462 . . . . . . . . . . . . . . . . . . . . Cpe05g01365 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01365 Cpe_Chr05 FPKM 27.663158 32.464104 36.620537 35.797268 1.74955 1.03631 1.388997 13.135515 13.997449 14.346073