Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01373 ATGAGTGTTTCCAGGTTTATTAAGTGTGTTACCGTTGGCGATGGTGCTGTTGGGAAGACTTGTATGCTTATCTCCTACACCAGCAACACTTTCCCCACCGATTACGTGCCGACCGTTTTCGACAATTTTAGTGCAAATGTAGTTGTGGATGGCAGTACTGTCAACCTGGGCTTGTGGGATACTGCTGGTATGTTCAAAACAAGTCTTTACATAACATGTTTTCTTGCTGAAAGTCTGATGTGTATGAGTCATGAACCAGGCCAGGAAGATTACAATAGGTTGAGACCGTTGAGCTACCGTGGAGCCGATGTATTTCTCTTAGCGTTCTCGCTCATAAGCAAGGCTAGCTATGAAAATGTGGCCAAGAAATGGATTCCTGAACTGAGGCACTATGCTCCTGGTGTACCAGTTATTCTTGTCGGGACTAAGCTTGACCTTCGAGAAGATAAACAGTACCTGATCGAACACCCGGGGGTAGTCCCCATTACCACGTCCCAGGGGGAGGAACTCAGAAAACTAATCGGTGCCCCAGTTTACATCGAATGCAGTTCGAAAACACAGCAAAATGTGAAAGCCGTGTTCGATGCAGCGATCAAAGTGGTTCTCCAGCCTCCAAAGCGGAAGAAGCGAAAGAAGCGAAAGGCACAGAAGTCGTGTTCTATATTATGA 669 46.34 MSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGMFKTSLYITCFLAESLMCMSHEPGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPVILVGTKLDLREDKQYLIEHPGVVPITTSQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKRKKRKKRKAQKSCSIL 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9651562 9655188 - Cp4.1LG05g13670.1 Cpe05g01373 470578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01373 222 ProSiteProfiles small GTPase Ras family profile. 2 222 IPR001806 GO:0003924|GO:0005525
Cpe05g01373 222 ProSiteProfiles small GTPase Rab1 family profile. 2 222 - -
Cpe05g01373 222 ProSiteProfiles small GTPase Rho family profile. 1 201 - -
Cpe05g01373 222 Pfam Ras family 87 202 IPR001806 GO:0003924|GO:0005525
Cpe05g01373 222 Pfam Ras family 8 64 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01373 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101219263 350.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01373 Cpe-Chr5:9651562 Cpe14g01033 Cpe-Chr14:8681772 3.49E-118 dispersed
Cpe05g01373 Cpe-Chr5:9651562 Cpe19g01047 Cpe-Chr19:7233706 1.98E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01373 Cpe_Chr05 FPKM 160.626007 169.547882 215.576172 207.751511 121.004662 113.387215 100.698975 203.346771 211.713715 199.098495