Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01383 ATGCTCCCCAAATGGAAGTTTTTGCTCTGTTTTCTTTTTTCCTTTCAAGGAAGAAATTCAACACATTTGGCAGTGCTTGGATTTGATAAGAGCTCTGATAATCTAAGCTCAGAGAGATTTGAAAATTCATTTGGAAAGATGGGTGTCATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCACTCGGCTAACGCCTTGTCGAGGCGTCATACAAGAACGCTGTTATGTGAAAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTTCGACTTCATCATCGCACAAGAGGCAAGCCATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGACAGAGATGGGATTGATGAGCATTTCTGAGACCGACTTGACGGGAGCTTGGAGCCCTTCGGAGAATAACGACGCCTGTCGAAGAATGCTCGAGTCGACTGAAGCCAGAGATGTTTGCAGCAGGGACAAATCAAATGTTTTGGTTGGATCATCTTCACTCTCTGACTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATATGGCTGTACCCAAGTTTTGCTGTCCTGGAACGAAACTTCCCGAATTCTGTGGCGACGACGACGACGACATCTACAAGGAGTTTGACATGGATGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGATCTTTTCGAGAACGGTGGAATCGATAGCCTTTTCGAGGCGAAAGGCTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCCGACTCGGTTGTGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCATTACGGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCTTCCATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCGTCGTCTGATCGTAACAATGCTGTTCTACGTTACAAGGAGAAAAAGAAGACACGCAAATTTGAGAAACGAGTAAGATACGCGACACGCAAAGCTCGAGCCGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGCCGGAGAGGCGTATGATTACGACCCGTTGAGCCAGACTAGAAGCTGCTGA 1389 46.51 MLPKWKFLLCFLFSFQGRNSTHLAVLGFDKSSDNLSSERFENSFGKMGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSSTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACETEMGLMSISETDLTGAWSPSENNDACRRMLESTEARDVCSRDKSNVLVGSSSLSDFGSRPHTSDQPVELANMAVPKFCCPGTKLPEFCGDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVVSTKTEPILCFNSRQASGVSFSGITGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSC 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9738572 9742720 + Cp4.1LG05g13750.1 Cpe05g01383 470588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01383 462 SMART bboxneu5 94 136 IPR000315 GO:0008270
Cpe05g01383 462 SMART bboxneu5 46 93 IPR000315 GO:0008270
Cpe05g01383 462 ProSiteProfiles CCT domain profile. 405 447 IPR010402 GO:0005515
Cpe05g01383 462 CDD Bbox1_BBX-like 51 93 - -
Cpe05g01383 462 ProSiteProfiles Zinc finger B-box type profile. 89 136 IPR000315 GO:0008270
Cpe05g01383 462 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 47 461 - -
Cpe05g01383 462 Pfam CCT motif 405 447 IPR010402 GO:0005515
Cpe05g01383 462 Pfam B-box zinc finger 50 91 IPR000315 GO:0008270
Cpe05g01383 462 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Cpe05g01383 462 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 47 461 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01383 Cpe15g00673 CCT
Cpe04g00659 Cpe05g01383 CCT
Cpe05g01383 Cpe16g00362 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01383 Cpe-Chr5:9738572 Cpe15g00673 Cpe-Chr15:7348210 3.32E-163 dispersed
Cpe05g01383 Cpe-Chr5:9738572 Cpe04g00659 Cpe-Chr4:6710458 1.32E-164 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49592 PF06203 CCT 2.90E-15 CL0281 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01383 - - cmos:111451690 898.656