Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01385 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGGCACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCCGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACGTTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA 456 47.37 MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSAPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNVTCPLCRTPLMPEEETASCFW 151
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 9746425 9746880 + Cp4.1LG05g13760.1 Cpe05g01385 470590
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01385 151 Pfam Ring finger domain 94 137 IPR001841 -
Cpe05g01385 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 151 - -
Cpe05g01385 151 SUPERFAMILY RING/U-box 84 143 - -
Cpe05g01385 151 PANTHER - 1 151 IPR044249 -
Cpe05g01385 151 SMART ring_2 95 136 IPR001841 -
Cpe05g01385 151 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Cpe05g01385 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00657 Cpe-Chr4:6701276 Cpe05g01385 Cpe-Chr5:9746425 9.62E-60 dispersed
Cpe05g01385 Cpe-Chr5:9746425 Cpe15g00675 Cpe-Chr15:7360788 7.31E-72 dispersed
Cpe12g00393 Cpe-Chr12:2817816 Cpe05g01385 Cpe-Chr5:9746425 5.59E-06 transposed
Cpe16g00361 Cpe-Chr16:5310864 Cpe05g01385 Cpe-Chr5:9746425 6.76E-95 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01385 K16285 - csv:101216645 290.426