Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g01385 | ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGGCACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTTCGTAGTCGGATCCCAGCGATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCCGTCTGCCTTACCCAATTTGAACCTGAATCAGAGATTAACCATTTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACGTTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA | 456 | 47.37 | MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSAPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNVTCPLCRTPLMPEEETASCFW | 151 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 9746425 | 9746880 | + | Cp4.1LG05g13760.1 | Cpe05g01385 | 470590 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g01385 | 151 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
| Cpe05g01385 | 151 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 151 | - | - | |
| Cpe05g01385 | 151 | SUPERFAMILY | RING/U-box | 84 | 143 | - | - | |
| Cpe05g01385 | 151 | PANTHER | - | 1 | 151 | IPR044249 | - | |
| Cpe05g01385 | 151 | SMART | ring_2 | 95 | 136 | IPR001841 | - | |
| Cpe05g01385 | 151 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - | |
| Cpe05g01385 | 151 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 142 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g00657 | Cpe-Chr4:6701276 | Cpe05g01385 | Cpe-Chr5:9746425 | 9.62E-60 | dispersed | |
| Cpe05g01385 | Cpe-Chr5:9746425 | Cpe15g00675 | Cpe-Chr15:7360788 | 7.31E-72 | dispersed | |
| Cpe12g00393 | Cpe-Chr12:2817816 | Cpe05g01385 | Cpe-Chr5:9746425 | 5.59E-06 | transposed | |
| Cpe16g00361 | Cpe-Chr16:5310864 | Cpe05g01385 | Cpe-Chr5:9746425 | 6.76E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g01385 | K16285 | - | csv:101216645 | 290.426 |