Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01389 ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCAGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGTGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGTTTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCAGGGTGGCGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGTGGAAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG 624 53.53 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEKDGGGGGGGPGGSGANVGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGHHQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9768058 9768681 - Cp4.1LG05g13950.1 Cpe05g01389 470594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01389 207 MobiDBLite consensus disorder prediction 1 24 - -
Cpe05g01389 207 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe05g01389 207 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cpe05g01389 207 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cpe05g01389 207 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cpe05g01389 207 MobiDBLite consensus disorder prediction 1 21 - -
Cpe05g01389 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cpe05g01389 207 Gene3D Histone, subunit A 15 131 IPR009072 GO:0046982
Cpe05g01389 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 183 - -
Cpe05g01389 207 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
Cpe05g01389 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 183 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe05g01389 207 MobiDBLite consensus disorder prediction 116 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00231 Cpe-Chr1:1311500 Cpe05g01389 Cpe-Chr5:9768058 1.46E-56 dispersed
Cpe03g00156 Cpe-Chr3:787733 Cpe05g01389 Cpe-Chr5:9768058 8.82E-60 dispersed
Cpe05g00405 Cpe-Chr5:2291685 Cpe05g01389 Cpe-Chr5:9768058 1.08E-08 dispersed
Cpe05g01389 Cpe-Chr5:9768058 Cpe08g00829 Cpe-Chr8:6614923 3.79E-64 dispersed
Cpe16g00379 Cpe-Chr16:5421766 Cpe05g01389 Cpe-Chr5:9768058 1.01E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49593 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01389 K08065 - csv:101219076 239.58