Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01400 ATGCAAGCTTCTCAGCTTCATAGAGGTCAACATATGTCGAAAAGACTGTGTTATCAGCCACTTCAAGGAGTGGATGCCTACTGTGTCTCCCAATTTCAAACTTTAGGTCGCCAATTATATACCAATGCTGGCAACGAAAGAGCTCAGTTCAATCTTCAAGACATCAGTGATCGGTACTGCACTTTGGAATCGTCCTCGGGAAGCCACGGCTATGCAACTCACAACTCGACGTCGACGACCGTCACTTTCTCATCCAATGGGAGTCCTTCTGATCAGCATAATTCCCCTGACAATACGTATGGCTCACCAGTAAGCGGATCCTGCATAACAGATGATATTAGTGATTTTAGGCACAAACTGCTGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATATTATTGATAGTTTTGATAGTTTCTACCAGGAAGGAACAGAGAATTCAGAAGTGGGAAGTTGGGGACAAGTGATGGATGCTATCACTAAAGGGAACTTAAAAAAGATCCTAATAGCTTGTGCTAAGGCCGTGTCCGATAATGATGCCTTAATGGCGCAATGGCTTATGGATGAACTGCGCAAGATGGTGTCGGTTCGGGGTGAACCGATGCAGAGATTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGTCAGCCTTCTCAGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGCATGGAGCTCCTCTCTTATATGCATGTTTTGTACGATGTTTGCCCGTATTTCAAATTTGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTACACATCATTGATTTCCAAATCTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGACCGCCTCACATTCGTATAACCGGCATAGATGATCCTGCATCAGCTCACGCTCGGGGAGGCGGTCTAGATATCGTTGGGATGAGGCTTTCTAAGTTAGCGAAGTTATTTAATGTCCCATTTGAGTTTCACTCGGCTGCCATCTCTGGCTGCGACGTTCAGCAGAAAGACTTGGGAATTCGACGAGGGGAGGCTTTAGCAGTGAACTTTGCATTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAACCATCGAGATCGGTTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACGAACACCGCTGCGTTCTTTCCCCGGTTCATCGAGACGCTGGATTACTACAACGCCATGTTCGAATCAATCGACGTTACTCTTCCAAGGCAGCACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCAGAGAGAGTAGAACGACACGAGCTACTCGGAAAGTGGCGACTGCGATTCTCAATGGCAGGATTCACTCCCTACCCATTAAGCTCTTTGGTGAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAAAGAAGGGGCTCTATATCTAGGTTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1611 46.12 MQASQLHRGQHMSKRLCYQPLQGVDAYCVSQFQTLGRQLYTNAGNERAQFNLQDISDRYCTLESSSGSHGYATHNSTSTTVTFSSNGSPSDQHNSPDNTYGSPVSGSCITDDISDFRHKLLELETVMLGPDSDIIDSFDSFYQEGTENSEVGSWGQVMDAITKGNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARSAFSGSSIYKSLRCKEPASMELLSYMHVLYDVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAHARGGGLDIVGMRLSKLAKLFNVPFEFHSAAISGCDVQQKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFSMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEKEGALYLGWMDRDLVASCAWK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9850883 9852493 + Cp4.1LG05g13900.1 Cpe05g01400 470605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01400 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 536 IPR005202 -
Cpe05g01400 536 MobiDBLite consensus disorder prediction 79 104 - -
Cpe05g01400 536 Pfam GRAS domain family 166 536 IPR005202 -
Cpe05g01400 536 ProSiteProfiles GRAS family profile. 157 536 IPR005202 -
Cpe05g01400 536 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 18 536 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01400 Cpe16g00391 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00742 Cpe-Chr2:4722576 Cpe05g01400 Cpe-Chr5:9850883 5.42E-173 dispersed
Cpe05g01400 Cpe-Chr5:9850883 Cpe14g00768 Cpe-Chr14:6042419 0 dispersed
Cpe19g00670 Cpe-Chr19:5347677 Cpe05g01400 Cpe-Chr5:9850883 1.05E-59 dispersed
Cpe19g00807 Cpe-Chr19:6062922 Cpe05g01400 Cpe-Chr5:9850883 6.48E-63 dispersed
Cpe16g00391 Cpe-Chr16:5492187 Cpe05g01400 Cpe-Chr5:9850883 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49595 PF03514 GRAS 1.60E-134 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01400 - - csv:101221914 965.681