Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01400 ATGCAAGCTTCTCAGCTTCATAGAGGTCAACATATGTCGAAAAGACTGTGTTATCAGCCACTTCAAGGAGTGGATGCCTACTGTGTCTCCCAATTTCAAACTTTAGGTCGCCAATTATATACCAATGCTGGCAACGAAAGAGCTCAGTTCAATCTTCAAGACATCAGTGATCGGTACTGCACTTTGGAATCGTCCTCGGGAAGCCACGGCTATGCAACTCACAACTCGACGTCGACGACCGTCACTTTCTCATCCAATGGGAGTCCTTCTGATCAGCATAATTCCCCTGACAATACGTATGGCTCACCAGTAAGCGGATCCTGCATAACAGATGATATTAGTGATTTTAGGCACAAACTGCTGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATATTATTGATAGTTTTGATAGTTTCTACCAGGAAGGAACAGAGAATTCAGAAGTGGGAAGTTGGGGACAAGTGATGGATGCTATCACTAAAGGGAACTTAAAAAAGATCCTAATAGCTTGTGCTAAGGCCGTGTCCGATAATGATGCCTTAATGGCGCAATGGCTTATGGATGAACTGCGCAAGATGGTGTCGGTTCGGGGTGAACCGATGCAGAGATTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGTCAGCCTTCTCAGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGCATGGAGCTCCTCTCTTATATGCATGTTTTGTACGATGTTTGCCCGTATTTCAAATTTGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTACACATCATTGATTTCCAAATCTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGACCGCCTCACATTCGTATAACCGGCATAGATGATCCTGCATCAGCTCACGCTCGGGGAGGCGGTCTAGATATCGTTGGGATGAGGCTTTCTAAGTTAGCGAAGTTATTTAATGTCCCATTTGAGTTTCACTCGGCTGCCATCTCTGGCTGCGACGTTCAGCAGAAAGACTTGGGAATTCGACGAGGGGAGGCTTTAGCAGTGAACTTTGCATTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAACCATCGAGATCGGTTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACGAACACCGCTGCGTTCTTTCCCCGGTTCATCGAGACGCTGGATTACTACAACGCCATGTTCGAATCAATCGACGTTACTCTTCCAAGGCAGCACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCAGAGAGAGTAGAACGACACGAGCTACTCGGAAAGTGGCGACTGCGATTCTCAATGGCAGGATTCACTCCCTACCCATTAAGCTCTTTGGTGAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAAAGAAGGGGCTCTATATCTAGGTTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1611 46.12 MQASQLHRGQHMSKRLCYQPLQGVDAYCVSQFQTLGRQLYTNAGNERAQFNLQDISDRYCTLESSSGSHGYATHNSTSTTVTFSSNGSPSDQHNSPDNTYGSPVSGSCITDDISDFRHKLLELETVMLGPDSDIIDSFDSFYQEGTENSEVGSWGQVMDAITKGNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARSAFSGSSIYKSLRCKEPASMELLSYMHVLYDVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAHARGGGLDIVGMRLSKLAKLFNVPFEFHSAAISGCDVQQKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFSMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEKEGALYLGWMDRDLVASCAWK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9850883 9852493 + Cp4.1LG05g13900.1 Cpe05g01400 470605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01400 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 536 IPR005202 -
Cpe05g01400 536 MobiDBLite consensus disorder prediction 79 104 - -
Cpe05g01400 536 Pfam GRAS domain family 166 536 IPR005202 -
Cpe05g01400 536 ProSiteProfiles GRAS family profile. 157 536 IPR005202 -
Cpe05g01400 536 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 18 536 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01400 - - - csv:101221914 965.681
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g01400 Cpe16g00391 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00742 Cpe-Chr2:4722576 Cpe05g01400 Cpe-Chr5:9850883 5.42E-173 dispersed
Cpe05g01400 Cpe-Chr5:9850883 Cpe14g00768 Cpe-Chr14:6042419 0 dispersed
Cpe19g00670 Cpe-Chr19:5347677 Cpe05g01400 Cpe-Chr5:9850883 1.05E-59 dispersed
Cpe19g00807 Cpe-Chr19:6062922 Cpe05g01400 Cpe-Chr5:9850883 6.48E-63 dispersed
Cpe16g00391 Cpe-Chr16:5492187 Cpe05g01400 Cpe-Chr5:9850883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g674 Blo02g00135 Blo15g00454 Bda06g00409 Bda13g00599 . . . . . . Cma02g00217 Cma20g00670 . Car20g00575 . . . . . . . . . . . . . . . . . Cone3ag1294 Cone10ag1246 . . . . Chy11g00700 . . . . . Bpe14g00729 Bpe07g00645 Bma02g01308 Bma12g00842 . Cmo02g00224 Cmo20g00673 . . . . Cpe16g00391 Cpe05g01400 Bhi10g01329 . . . . . . . . . . . . . . Csa06g00941 . Cme11g00929
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00113 CCT,ECH 77 758 GRAS Transcription Factor Family AT2G37650 53.7 4.3e-194 675.2
Cpe08g01167 CCT,ECH 76 757 GRAS Transcription Factor Family AT2G37650 53.2 1.3e-193 673.7
Cpe02g01222 . 235 617 GRAS Transcription Factor Family AT3G46600 55.6 2.8e-124 443.0
Cpe20g00829 CST 116 466 GRAS Transcription Factor Family AT3G46600 50.7 6.3e-92 335.5
Cpe10g00472 CCT 25 442 GRAS Transcription Factor Family AT3G49950 61.0 3.1e-136 482.3
Cpe19g00662 CCT 39 438 GRAS Transcription Factor Family AT3G49950 57.9 8.5e-126 447.6
Cpe01g00671 . 96 561 GRAS Transcription Factor Family AT4G36710 53.1 7.7e-126 448.0
Cpe01g00556 . 18 438 GRAS Transcription Factor Family AT5G41920 66.0 1.7e-147 519.6
Cpe19g00183 . 445 839 GRAS Transcription Factor Family AT5G41920 56.3 5.0e-118 421.8
Cpe10g01027 . 456 832 GRAS Transcription Factor Family AT5G41920 56.4 1.9e-114 409.8
Cpe01g00711 . 1 610 GRAS Transcription Factor Family AT5G66770 57.5 2.0e-173 606.3
Cpe14g00561 CCT 1 591 GRAS Transcription Factor Family AT5G66770 57.9 9.5e-171 597.4
Cpe10g00605 CCT,CST 32 581 GRAS Transcription Factor Family AT5G66770 56.5 3.2e-166 582.4
Cpe19g00807 CCT,CST 66 548 GRAS Transcription Factor Family AT5G66770 58.8 6.8e-153 538.1
Cpe05g01400 CST 57 536 GRAS Transcription Factor Family AT1G50600 59.0 4.3e-162 568.5
Cpe16g00391 CST 50 538 GRAS Transcription Factor Family AT1G50600 58.4 2.1e-161 566.2
Cpe08g00851 CCT 1 531 GRAS Transcription Factor Family AT1G50600 54.3 5.2e-160 561.6
Cpe14g00768 . 45 544 GRAS Transcription Factor Family AT1G50600 57.7 5.2e-160 561.6
Cpe10g00749 . 111 549 GRAS Transcription Factor Family AT1G50600 57.0 1.3e-139 493.8
Cpe02g00742 . 210 580 GRAS Transcription Factor Family AT1G50600 61.5 3.5e-132 469.2
Cpe02g00884 . 195 576 GRAS Transcription Factor Family AT1G50600 51.0 1.4e-109 394.0
Cpe14g00825 CCT 1 626 GRAS Transcription Factor Family AT1G63100 50.6 2.4e-162 569.7
Cpe01g01843 CCT 44 581 GRAS Transcription Factor Family AT1G14920 67.1 8.3e-206 713.8
Cpe13g00364 CCT 44 575 GRAS Transcription Factor Family AT1G14920 66.6 5.6e-202 701.0
Cpe01g01990 CCT,CST 55 609 GRAS Transcription Factor Family AT1G14920 58.2 1.4e-176 616.7
Cpe13g00557 . 52 567 GRAS Transcription Factor Family AT1G14920 60.9 1.4e-165 580.1
Cpe02g01442 CCT,CST 1 540 GRAS Transcription Factor Family AT1G14920 54.3 2.8e-153 539.3
Cpe03g00709 CCT 28 533 GRAS Transcription Factor Family AT1G14920 52.8 2.8e-145 512.7
Cpe01g01990 CCT,CST 55 610 GRAS Transcription Factor Family AT1G66350 59.0 2.7e-177 619.0
Cpe01g01843 CCT 1 579 GRAS Transcription Factor Family AT1G66350 56.4 1.5e-172 603.2
Cpe13g00364 CCT 44 571 GRAS Transcription Factor Family AT1G66350 59.0 6.6e-168 587.8
Cpe13g00557 . 52 567 GRAS Transcription Factor Family AT1G66350 60.5 5.4e-162 568.2
Cpe02g01442 CCT,CST 1 538 GRAS Transcription Factor Family AT1G66350 56.4 1.2e-156 550.4
Cpe03g00709 CCT 1 533 GRAS Transcription Factor Family AT1G66350 54.2 1.0e-152 537.3
Cpe16g00623 . 210 734 GRAS Transcription Factor Family AT1G07520 50.4 2.3e-139 493.0
Cpe05g01400 CST 19 536 GRAS Transcription Factor Family AT5G48150 65.6 1.1e-191 666.8
Cpe16g00391 CST 92 538 GRAS Transcription Factor Family AT5G48150 71.5 2.9e-189 658.7
Cpe14g00768 . 17 544 GRAS Transcription Factor Family AT5G48150 58.7 1.3e-173 606.7
Cpe08g00851 CCT 17 531 GRAS Transcription Factor Family AT5G48150 60.0 1.7e-173 606.3
Cpe10g00749 . 16 549 GRAS Transcription Factor Family AT5G48150 51.5 4.3e-148 521.9
Cpe02g00742 . 101 580 GRAS Transcription Factor Family AT5G48150 51.7 9.2e-135 477.6
Cpe01g01843 CCT 46 578 GRAS Transcription Factor Family AT2G01570 68.7 8.5e-212 733.8
Cpe13g00364 CCT 46 571 GRAS Transcription Factor Family AT2G01570 68.2 4.5e-205 711.4
Cpe01g01990 CCT,CST 57 606 GRAS Transcription Factor Family AT2G01570 60.9 2.0e-181 632.9
Cpe13g00557 . 53 567 GRAS Transcription Factor Family AT2G01570 60.2 2.9e-167 585.9
Cpe02g01442 CCT,CST 27 540 GRAS Transcription Factor Family AT2G01570 56.9 2.5e-155 546.2
Cpe03g00709 CCT 27 537 GRAS Transcription Factor Family AT2G01570 51.8 2.5e-147 519.6
Cpe01g01990 CCT,CST 55 610 GRAS Transcription Factor Family AT1G66350 59.0 2.7e-177 619.0
Cpe01g01843 CCT 1 579 GRAS Transcription Factor Family AT1G66350 56.4 1.5e-172 603.2
Cpe13g00364 CCT 44 571 GRAS Transcription Factor Family AT1G66350 59.0 6.6e-168 587.8
Cpe13g00557 . 52 567 GRAS Transcription Factor Family AT1G66350 60.5 5.4e-162 568.2
Cpe02g01442 CCT,CST 1 538 GRAS Transcription Factor Family AT1G66350 56.4 1.2e-156 550.4
Cpe03g00709 CCT 1 533 GRAS Transcription Factor Family AT1G66350 54.2 1.0e-152 537.3
Cpe01g01990 CCT,CST 57 606 GRAS Transcription Factor Family AT3G03450 59.0 2.1e-172 602.8
Cpe13g00364 CCT 46 571 GRAS Transcription Factor Family AT3G03450 61.5 1.2e-170 597.0
Cpe01g01843 CCT 46 578 GRAS Transcription Factor Family AT3G03450 60.0 7.5e-170 594.3
Cpe13g00557 . 53 567 GRAS Transcription Factor Family AT3G03450 60.7 9.9e-162 567.4
Cpe02g01442 CCT,CST 27 539 GRAS Transcription Factor Family AT3G03450 58.2 1.1e-155 547.4
Cpe03g00709 CCT 27 533 GRAS Transcription Factor Family AT3G03450 56.0 3.2e-152 535.8
Cpe01g01990 CCT,CST 56 609 GRAS Transcription Factor Family AT5G17490 55.2 9.1e-157 550.8
Cpe01g01843 CCT 42 578 GRAS Transcription Factor Family AT5G17490 56.1 1.1e-154 543.9
Cpe13g00364 CCT 42 571 GRAS Transcription Factor Family AT5G17490 56.8 3.0e-152 535.8
Cpe13g00557 . 52 567 GRAS Transcription Factor Family AT5G17490 54.8 1.5e-143 506.9
Cpe02g01442 CCT,CST 23 540 GRAS Transcription Factor Family AT5G17490 53.9 7.0e-141 498.0
Cpe03g00709 CCT 23 531 GRAS Transcription Factor Family AT5G17490 52.0 1.3e-134 477.2
Cpe02g00884 . 1 576 GRAS Transcription Factor Family AT1G21450 57.4 6.5e-175 611.3
Cpe06g00888 . 1 550 GRAS Transcription Factor Family AT1G21450 54.7 3.0e-164 575.9
Cpe08g00851 CCT 155 531 GRAS Transcription Factor Family AT1G21450 53.4 6.1e-117 418.7
Cpe14g00768 . 168 544 GRAS Transcription Factor Family AT1G21450 51.6 7.8e-112 401.7
Cpe02g00742 . 212 580 GRAS Transcription Factor Family AT1G21450 50.3 2.4e-105 380.2
Cpe02g01222 . 243 617 GRAS Transcription Factor Family AT5G59450 55.4 5.7e-126 448.7
Cpe08g01167 CCT,ECH 306 757 GRAS Transcription Factor Family AT5G59450 50.1 3.1e-124 443.0
Cpe20g00829 CST 130 466 GRAS Transcription Factor Family AT5G59450 50.7 3.0e-95 346.7
Cpe10g00749 . 32 549 GRAS Transcription Factor Family AT4G17230 61.6 8.3e-174 607.4
Cpe05g01400 CST 26 536 GRAS Transcription Factor Family AT4G17230 50.2 5.4e-141 498.4
Cpe14g00768 . 49 544 GRAS Transcription Factor Family AT4G17230 51.9 1.3e-134 477.2
Cpe08g00851 CCT 45 531 GRAS Transcription Factor Family AT4G17230 50.6 7.9e-132 468.0
Cpe02g00742 . 207 580 GRAS Transcription Factor Family AT4G17230 53.2 1.2e-111 401.0
Cpe05g01400 CST 125 536 GRAS Transcription Factor Family AT2G04890 66.6 1.8e-160 562.8
Cpe16g00391 CST 127 538 GRAS Transcription Factor Family AT2G04890 65.6 2.0e-159 559.3
Cpe08g00851 CCT 135 531 GRAS Transcription Factor Family AT2G04890 60.6 1.7e-145 513.1
Cpe14g00768 . 148 544 GRAS Transcription Factor Family AT2G04890 59.9 4.5e-143 505.0
Cpe10g00749 . 169 549 GRAS Transcription Factor Family AT2G04890 59.6 4.3e-125 445.3
Cpe02g00742 . 210 580 GRAS Transcription Factor Family AT2G04890 59.0 2.8e-124 442.6
Cpe04g00904 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 2.8e-176 615.5
Cpe18g00182 . 3 461 GRAS Transcription Factor Family AT1G50420 63.5 7.8e-171 597.4
Cpe09g00431 . 63 526 GRAS Transcription Factor Family AT1G50420 61.8 4.9e-157 551.6
Cpe08g00744 CCT 310 673 GRAS Transcription Factor Family AT4G00150 54.9 1.8e-102 370.5
Cpe14g00948 CCT 367 729 GRAS Transcription Factor Family AT4G00150 54.3 2.4e-102 370.2
Cpe14g00561 CCT 1 591 GRAS Transcription Factor Family AT3G50650 51.2 4.7e-148 521.9
Cpe10g00605 CCT,CST 33 581 GRAS Transcription Factor Family AT3G50650 52.3 4.9e-145 511.9
Cpe19g00807 CCT,CST 66 548 GRAS Transcription Factor Family AT3G50650 54.1 2.4e-136 483.0
Cpe19g00183 . 185 837 GRAS Transcription Factor Family AT3G54220 60.4 1.0e-205 713.8
Cpe10g01027 . 175 830 GRAS Transcription Factor Family AT3G54220 60.1 4.3e-204 708.4
Cpe01g00556 . 68 436 GRAS Transcription Factor Family AT3G54220 64.5 8.5e-136 481.5
Cpe19g00670 . 92 492 GRAS Transcription Factor Family AT4G37650 65.4 5.1e-155 545.0
Cpe10g00479 . 84 484 GRAS Transcription Factor Family AT4G37650 66.1 1.9e-154 543.1
Cpe17g01083 . 9 415 GRAS Transcription Factor Family AT4G37650 50.2 1.3e-113 407.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003195 1 8 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49595 PF03514 GRAS 1.60E-134 CL0063 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g01400 Cpe_Chr05 FPKM 25.877602 29.833929 36.36348 36.36409 32.672775 33.981468 30.488546 46.515453 46.936504 43.62476