Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01401 ATGAAATTTCCGTCCGGCATCAACACCAAGATGCCAGCTGATAATTCAATTCCATTTGACCGAGATGCCGAGCCTTTCGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCAGTGAAGAAAGTATATCGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGGAAATTCAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCGGAGGTTCAGCTGCTGAGCACGTTGAGTAACGATTATATCATAGTTTGCTACAGTGTTTGGAATGATGATGAGCACAATACATTGAATTTCATTACCGAGGTGTGTACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTTCATAATCATGAGCCTTGCATTATTCACCGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAATATTGGTCAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAAGAGTCATGCTGCGCACTCAATCATAGGCACACCGGAGTATATGGCACCAGAACTGTACGAGGAAGATTACACAGAGATGGTGGATATATACTCTTTTGCGATGTGTTTGCTTGAGATGGTCACGATGGAGATACCATACAGTGAATGTGATAGTATTGCCAAGATATACAAGAAGGTGACGACTGGAATAAAACCCCAAGCATTAAACAAAGTGACAAATGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTACCACTTCTGAACTTCTCAAGGACCCCTTCTTCGACGAAGTCAGGGATGAAGATTCCGAACAGAGTTATTAG 921 43.32 MKFPSGINTKMPADNSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRKFSGDPVFINRLRSEVQLLSTLSNDYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHNHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGKSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSIAKIYKKVTTGIKPQALNKVTNDEVRAFIEKCIAQPRARPTTSELLKDPFFDEVRDEDSEQSY 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9854058 9857031 + Cp4.1LG05g13880.1 Cpe05g01401 470606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01401 306 Gene3D Phosphorylase Kinase; domain 1 20 117 - -
Cpe05g01401 306 SUPERFAMILY Protein kinase-like (PK-like) 29 295 IPR011009 -
Cpe05g01401 306 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 298 - -
Cpe05g01401 306 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 11 298 - -
Cpe05g01401 306 Gene3D Transferase(Phosphotransferase) domain 1 119 300 - -
Cpe05g01401 306 ProSiteProfiles Protein kinase domain profile. 36 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe05g01401 306 Pfam Protein kinase domain 40 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00678 Cpe05g01401 CCT
Cpe04g00678 Cpe05g01401 ECH
Cpe05g01401 Cpe16g00392 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01401 Cpe-Chr5:9854058 Cpe20g00266 Cpe-Chr20:1491133 1.05E-83 dispersed
Cpe14g00766 Cpe-Chr14:6028325 Cpe05g01401 Cpe-Chr5:9854058 1.83E-162 transposed
Cpe16g00392 Cpe-Chr16:5495339 Cpe05g01401 Cpe-Chr5:9854058 7.97E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62445 PF00069 Pkinase 9.80E-51 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01401 K08867 - csv:101222153 580.482