Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01416 ATGCAACAAAGCTTGAGAATGATGGAGAAAATGGTAAATGATGAATTCACAAACTCTTTCCTCCAAATCCCGCTCGCCGGATCCAACCCTTTTTCGGCCAAGAAGAAGCGCAACCACCCCGGAACCCCCGATCCCGACGCGGAAGTCATAGCGCTGTCGCCCAAGACACTGATGGCCATGAACAGATTCGTGTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTCCATAGACGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGCAACAAAGAGGTGAGGAAGAGAGTGTATGTGTGCCCTGAAACCAGCTGCGTGCACCACCATCCATCCAGAGCGCTGGGGGATCTCACCGGGATTAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCTAAGAGATATGCTGTTCAGTCTGATTGCAAAGCCCACTCCAAAACTTGTGGCACTAAAGAGTACAAATGTGGCTGTGGTACTCTATTTTCCAGGAGAGACAGCTTCATTACTCACAGGGCTTTCTGCGATGCATTAGCTGAAGAAACAGCGAGAGTGAACGCCGCCACTACAATAACAGCCGCCATGACCGCCGCCGGCAATTTCAATTGCAATTTCATGGCCGGAATCACAGAACCACCATTCATGCCTTCAATTTTCAGCTGCAATGGCCTCTCCTCAAGAACCAACAACAACAATCTACACCCACTTCCCCAAATTAATTCAGGGCTAATGTACTGTGACCCTTTATTAAATTCTTGCCACGCGCCGCCACCAGCTGATTACAATCTGAATTGGGTATTTGGAACAAAGGGTAATAATTCAGTTCAAAATCCGCCGTTGATGAGTGGCGGTGGCGGTGGCGGTGTTTCTTCACTGTACAGCCACCAATTACAGCAAGTGAATCAAACCCACATGGCTAACATGTCAGCCACTGCTTTGCTGCAGAAAGCTGCTGAAATTGGGGCAAATTCCAGCTCGGATCCACCATTTTTTCAAGAGGGTTTTGTGTTCAAATGCAGCGGCGGTACAGTTCAAAATGGGAGTGAATTTTCAACTTCTGTTACTCAAATCCCAATTATGGCGAATGAGAATGAGATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTCATGGGAAGTGGAAGTGGGTTCACAGGAGGAGGGCAGACAAGGGATTTTCTTGGAGTTGGTGCCAACACTATTTGCCACACTTCATCCATTAATGGATGGATTTAG 1275 47.29 MQQSLRMMEKMVNDEFTNSFLQIPLAGSNPFSAKKKRNHPGTPDPDAEVIALSPKTLMAMNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDCKAHSKTCGTKEYKCGCGTLFSRRDSFITHRAFCDALAEETARVNAATTITAAMTAAGNFNCNFMAGITEPPFMPSIFSCNGLSSRTNNNNLHPLPQINSGLMYCDPLLNSCHAPPPADYNLNWVFGTKGNNSVQNPPLMSGGGGGGVSSLYSHQLQQVNQTHMANMSATALLQKAAEIGANSSSDPPFFQEGFVFKCSGGTVQNGSEFSTSVTQIPIMANENEMYTAKRRRTQSEFMGSGSGFTGGGQTRDFLGVGANTICHTSSINGWI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9928676 9930991 - Cp4.1LG05g14120.1 Cpe05g01416 470621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01416 424 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cpe05g01416 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cpe05g01416 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 418 - -
Cpe05g01416 424 PANTHER ZINC FINGER PROTEIN MAGPIE 30 418 - -
Cpe05g01416 424 Gene3D Classic Zinc Finger 59 86 - -
Cpe05g01416 424 Gene3D Classic Zinc Finger 97 187 - -
Cpe05g01416 424 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cpe05g01416 424 SMART c2h2final6 139 159 IPR013087 -
Cpe05g01416 424 SMART c2h2final6 63 85 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00706 Cpe05g01416 CCT
Cpe05g01416 Cpe16g00408 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01416 Cpe-Chr5:9928676 Cpe08g01104 Cpe-Chr8:8347530 8.51E-109 dispersed
Cpe16g00408 Cpe-Chr16:5562431 Cpe05g01416 Cpe-Chr5:9928676 1.41E-152 wgd
Cpe04g00706 Cpe-Chr4:7011986 Cpe05g01416 Cpe-Chr5:9928676 3.64E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49599 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01416 K25870 - csv:101211656 488.804