Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01441 ATGGCTTTGAGTCTTCCTGGTCAAAGCTCGCTCATGGAGAGCTTATTAAGTCTTACATTGATTGGTTCGATATGGGCATTTCTTGCTGGTTCTGCATGTTGTCAAAGGCCAGCGGTTGTGAACATTGGTGCAGTTTTCATTTTTGATTCAGTTATAGGAAGAGCCGCGAAGGTGGCAATGGAAGCTGCAGTTTCTGATGTTAATGCAGACCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGACACTCATTGCAATACAAAATTCACTGGTTTAAGTGGTCGGTTCGAGTTCAATTCGGATCGGAATATCATCAGCAGAGGTTATGAGGTGCTTAATATCGATCAGACCGGGTTGCGCACGATTGGTTATTGGTCCAATATCACAGGCTTTACAATCCAGTCACCTGAAACTCTAAAGCAGAAACGAATTAGTTATACTCATCTAAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGGAAGACAGCAAAACCACGTGGATGGGTGATTGCAGACAATGAAAGACCATTGATAATTGGAGTGCCACTTAGAGTAAGTTTCGTTGAATTTGTTTCAGTAACCAATGGAAGCAACAAAAACATTGAAGGATATTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTCCCGTATGATATATTTGATGCAGCTGTTGGAGATATTGCAATTGTAGCCAACCGCACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACTGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAATCAAATGCTTGGGTTTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCGGCGTCGTTTTTTATGATCGGTGCAGTCATATGGCTTCTTGAGCATCGAGTAAACGATGATTTCCGTGGTCCACCAAAGAGGCAGCTCGTGACAGTAATACTGTTCAGCTTCTCAACCTTGTTTAAAACAAACCAGGAAGATACTGTAAGTCCACTTGGACGCATGGTAATGGTGATGTGGCTGTTCTTATTGATGGTTATCACATCAAGCTATACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAGTGAACACCCAATTGGGTACCAGGTTGGATCGTTTGCATATAGCTATCTGACCGAGAGCCTTTACCTTCCGCGATCGAGGCTTGTACCTCTAGGCTCTCCTGAAGAGTATGAATCAGCACTATTGAAGGGGCCCTTCAAAAAAGGAGGGGTGGCGGCTGTTGTTGATGAACTGCCATATGTGGAGTTATTCTTATCAGGGAGGAACGACTTCGGAATGATCGGTCAGCCATTCACCAAGAGTGGATGGGGATTTAGAGGATCTCCACTTGCAGTAGACATTTCAACAGCAATTCTAAAGCTGTCCGAGAATGGAAAACTTCAGAAGATCCATGAGAAGTGGTTCTGCAAGAAGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTACTCAGCTTCTGGGGTCTATATCTGTTGTGCGGTGCCTTTTCACTCGCTGCTCTTCTCATATTTTTGCTCCGAATCAGATGGTATCATCTAATTCAAACTCAAGCTGGATTCATGTCTTTATCGACTTCGTCGATGAAAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGAATGATACTCAGAATCAGGCTAAATGATAGCTTATTGATGTGCATTGGAAAGGTTGAAGGAACTTTGGGTTTATTCTGTAATGGAAGGGAAGTTTCGTGGAAAGATTTTGAAATAGGGACGGTGATGATTGTTCAAAGGGAATCATTTGTTCATCTTTTTGGAGCAATGTTGGTGTTTTGGGTTTGGAGGATTGTGATCAAAGCCAGAGTTGTGGTATTTGCATTGTTCTTTGGGGTATGGATGCCTTTGGGAGTGATTGGTGTGTCTCGAAACACGAGAGTGGTGAACGTTGGAGTTTTGTTCACTCATGATTCAGTTATTGGAAGGTCTGCACAGCCTGCAATCTTAGCTGCCATGGATGATGTTAATGCTGATAACAGTGTTCTTCCTGGAACAAAGCTGAACTTGATCTTACACGACACGAATTGTAGTGGATTTCTTGGAACAGTGGAAGCCTTGCGGCTGATGGAAGATGAAGTAGTTGCCGCCATTGGCCCACAATCCTCAAACATCGCTCACTTCATTTCCCATATCATCAACGAACTCCACATACCCCTTATATCATTTGGAGCAACAGATCCTACTTTGACCACACCACACTATCCATACTTTGTTCGAACCACACAGAATGATTACTTCCAAATGAACGCAATAGCTGATCTCATAGACCACTTCGGATGGAGAGAGGTCATAGCCATCTTTGTAGATGATGACAATGCCAGAAACGGGATATCAGCATTGAACGATGCCTTAGCAAAGAAGCGTGTCAGGATCTCATACAAGGCCACCTTCTCTCCTGGCTCCCCCACTAGCGTGATAAATGACTTATTGGTATCAGTAAACCTCATGGAATCTCGTGTTTATATTGTTCATGTTAATCCCGACACTGGTTTATCAATATTCACCATTGCTAAGAAACTTGAAATGATGAACAGTGACTATGTCTGGATTGCAACAGATTGGCTTCCTTCTATTCTTGATTCATTTGAAACAAACAATCATGATGTAATGAATCATTTACAAGGAGTTGTTGCTCTTCGCCACCACATCCCTGATAGCAATCTCAAGAAGAACTTCGCCTCCAAATGGAACACTACAAGCTTCAACTCTTATGCACTTTATGCATACGACTCTGTTTGGTTAGCAGCCAGAGCTCTCCACACATTCTTTCAAGAAGGTGGCAATGTATCATTTTCTAATGACCCAAAGTTACATGAAATCAATGGAAGCAAGCTGCAGCTAACCTCACTTAGAGTGTTCAATGGCGGCGAACAACTTCTAGAGACAATCAAGAGAACCAAGTTCAGAGGTGTAAGTGGGTTGGTTCAATTTGGTGATGACAGAAACTTGATTCATCCAGCTTATGATATCATGAACATTGGAGGAACTGGTATGCGTAGAATTGGCTACTGGACAAATTATTCTGGTCTATCAACAATGACACCAGAGAGTTCATATTCAAAGCCTCTTAATGCTACCCCAAATGGCCATCTCTACACTGTAATATGGCCTGGTGAAGCAACAGCCGTTCCTCGTGGATGGGTGTTCCCGCACAACGGGAAGCCATTGCAAATTGTAGTGCCTAACCGTGTGAGTTACAAGGCTTTTGTGACTAAAGACAAGAGCCCACAAGGAGTTAAAGGGTATTGTATTGATGTGTTTGAAGCTGCTATAAACTTGTTGCCATATCCAGTTCCTCACGCATATATATTAAAGGGAGATGACAGTCTTGATTACAACAATCTTGTATATGACGTTTCACAGAATAGATATGATGCAGCTGTTGGTGATATTATGATTGTAACGAATAGGACGAAGTATGTGGACTTCACACAACCATTTATGGAGTCTGGACTTGTGGTTGTTACTGTTGTTAAAGAGAAGAAGTCGAGTCCATGGGCTTTTCTCAGCCCTTTTACTGTTCAAATGTGGGCTGTCACTGCAATACTCTTTGTTTTTGTTGGAGCTGTTGTTTGGATTCTTGAGCATCGGAGTAATGAAGAGTTTCGTGGTTCACCAAGGCAACAAATAATCACAGAAAACACTGTAAGCACCCTTGGACGGTCGGTGCTTATAATATGGCTCTTTGTTGTGTTAATTATCAATTCAAGCTACACAGCTGGTTTGACATCTATCTTAACAGTGCAGCAGCTAACTTCAAAGGTTGAAGGGATTGATAGCTTAATCTCTAGCACCGATGCTGTAGGAATTCAAGAAGGCTCATTTTCATTGAATTATCTGATTCATGAGCTGAATATAGCAGCTTCTAGGATCGTTAAGTTGAAGAGCCAGGAGGAATATATGGATGCTCTTCGCCGTGGACCTGCAAATGGTGGGGTAGCCGCCATTGTAGACGAGCTTCCTTATGTCGAGCTTTTCCTGTCGGGCACCAATTGTGTCTTCAGGACTGTCGGGCAGGAGTTCACTAAAAAGTGTTCGATGAATCTCAACCAAGTCGACGCAAACCAACTATCACTAACTAACTTCTGGGAGCTGTTTCTAATTTGTAGCATTGCCTGCATTGTTGCTCTTTTGATATTCTTCAGTAGAGTAGCATTCCAATATCGAAGAGCTACCCCTAAAGCCCAGCCTGAAGTCGAGGAGACCCAACCTGATAGGACGGGACGCTTCGGTCGTACGACTAGCTTCATCCAATTTCTAGATAAAAAAGAAGTCAAAAAGGCTAAAAGAAAATCCATTGATATCAACCCAGCTGGCCAGAGCTCTGAGGGTCACCCTGATGAACTCAAAAAGGCTAAAGGAAAATCCATTGATATCAACCCAGAAAACACTGTAAGCACCCTTGGACGGTCGGTGCTTATAATATGGCTCTTTGTTGTGTTAATTATCAATTCAAGCTACACAGCTGGTTTGACATCTATCTTAACAGTGCAGCAGCTAACTTCAAAGGTTGAAGGGATTGATAGCTTAATCTCTAGCACCGATGCTGTAGGAATTCAAGAAGGCTCATTTTCATTGAATTATCTGATTCATGAGCTGAATATAGCAGCTTCTAGGATCGTTAAGTTGAAGAGCCAGGAGGAATATATGGATGCTCTTCGCCGTGGACCTGCAAATGGTGGGGTAGCCGCCATTGTAGACGAGCTTCCTTATGTCGAGCTTTTCCTGTCGGGCACCAATTGTGTCTTCAGGACTGTCGGGCAGGAGTTCACTAAAAAGTGTTCGATGAATCTCAACCAAGTCGACGCAAACCAACTATCACTAACTAACTTCTGGGAGCTGTTTCTAATTTGTAGCATTGCCTGCATTGTTGCTCTTTTGATATTCTTCAGTAGAGTAGCATTCCAATATCGAAGAGCTACCCCTAAAGCCCAGCCTGAAGTCGAGGAGACCCAACCTGATAGGACGGGACGCTTCGGTCGTACGACTAGCTTCATCCAATTTCTAGATAAAAAAGAAGTCAAAAAGGCTAAAAGAAAATCCATTGATATCAACCCAGCTGGCCAGAGCTCTGAGGGTCACCCTGATGAACTCAAAAAGGCTAAAGGAAAATCCATTGATATCAACCCAGTTGCCCAGAGCTCTGAGGGCCACCCTGATTCACAGCCTCATTAG 5286 42.85 MALSLPGQSSLMESLLSLTLIGSIWAFLAGSACCQRPAVVNIGAVFIFDSVIGRAAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNTKFTGLSGRFEFNSDRNIISRGYEVLNIDQTGLRTIGYWSNITGFTIQSPETLKQKRISYTHLNQTLGNVTWPGGKTAKPRGWVIADNERPLIIGVPLRVSFVEFVSVTNGSNKNIEGYCIDLFNEARKLVPYDIFDAAVGDIAIVANRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEDTVSPLGRMVMVMWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEHPIGYQVGSFAYSYLTESLYLPRSRLVPLGSPEEYESALLKGPFKKGGVAAVVDELPYVELFLSGRNDFGMIGQPFTKSGWGFRGSPLAVDISTAILKLSENGKLQKIHEKWFCKKGCPGERRRKSEPNQLHLLSFWGLYLLCGAFSLAALLIFLLRIRWYHLIQTQAGFMSLSTSSMKRKKPSRDFFERMILRIRLNDSLLMCIGKVEGTLGLFCNGREVSWKDFEIGTVMIVQRESFVHLFGAMLVFWVWRIVIKARVVVFALFFGVWMPLGVIGVSRNTRVVNVGVLFTHDSVIGRSAQPAILAAMDDVNADNSVLPGTKLNLILHDTNCSGFLGTVEALRLMEDEVVAAIGPQSSNIAHFISHIINELHIPLISFGATDPTLTTPHYPYFVRTTQNDYFQMNAIADLIDHFGWREVIAIFVDDDNARNGISALNDALAKKRVRISYKATFSPGSPTSVINDLLVSVNLMESRVYIVHVNPDTGLSIFTIAKKLEMMNSDYVWIATDWLPSILDSFETNNHDVMNHLQGVVALRHHIPDSNLKKNFASKWNTTSFNSYALYAYDSVWLAARALHTFFQEGGNVSFSNDPKLHEINGSKLQLTSLRVFNGGEQLLETIKRTKFRGVSGLVQFGDDRNLIHPAYDIMNIGGTGMRRIGYWTNYSGLSTMTPESSYSKPLNATPNGHLYTVIWPGEATAVPRGWVFPHNGKPLQIVVPNRVSYKAFVTKDKSPQGVKGYCIDVFEAAINLLPYPVPHAYILKGDDSLDYNNLVYDVSQNRYDAAVGDIMIVTNRTKYVDFTQPFMESGLVVVTVVKEKKSSPWAFLSPFTVQMWAVTAILFVFVGAVVWILEHRSNEEFRGSPRQQIITENTVSTLGRSVLIIWLFVVLIINSSYTAGLTSILTVQQLTSKVEGIDSLISSTDAVGIQEGSFSLNYLIHELNIAASRIVKLKSQEEYMDALRRGPANGGVAAIVDELPYVELFLSGTNCVFRTVGQEFTKKCSMNLNQVDANQLSLTNFWELFLICSIACIVALLIFFSRVAFQYRRATPKAQPEVEETQPDRTGRFGRTTSFIQFLDKKEVKKAKRKSIDINPAGQSSEGHPDELKKAKGKSIDINPENTVSTLGRSVLIIWLFVVLIINSSYTAGLTSILTVQQLTSKVEGIDSLISSTDAVGIQEGSFSLNYLIHELNIAASRIVKLKSQEEYMDALRRGPANGGVAAIVDELPYVELFLSGTNCVFRTVGQEFTKKCSMNLNQVDANQLSLTNFWELFLICSIACIVALLIFFSRVAFQYRRATPKAQPEVEETQPDRTGRFGRTTSFIQFLDKKEVKKAKRKSIDINPAGQSSEGHPDELKKAKGKSIDINPVAQSSEGHPDSQPH 1761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10051077 10069161 + Cp4.1LG05g14500.1 Cpe05g01441 470646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01441 1761 SMART GluR_14 182 495 IPR001320 GO:0015276|GO:0016020
Cpe05g01441 1761 SMART GluR_14 1094 1404 IPR001320 GO:0015276|GO:0016020
Cpe05g01441 1761 CDD PBP1_GABAb_receptor_plant 666 1048 IPR044440 -
Cpe05g01441 1761 MobiDBLite consensus disorder prediction 1465 1492 - -
Cpe05g01441 1761 Pfam Bacterial extracellular solute-binding proteins, family 3 225 493 IPR001638 -
Cpe05g01441 1761 Gene3D - 780 1047 - -
Cpe05g01441 1761 MobiDBLite consensus disorder prediction 1710 1761 - -
Cpe05g01441 1761 MobiDBLite consensus disorder prediction 1745 1761 - -
Cpe05g01441 1761 Gene3D - 684 1022 - -
Cpe05g01441 1761 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1498 1629 - -
Cpe05g01441 1761 SUPERFAMILY Periplasmic binding protein-like II 1535 1628 - -
Cpe05g01441 1761 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 88 - -
Cpe05g01441 1761 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 654 1380 - -
Cpe05g01441 1761 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1381 1470 - -
Cpe05g01441 1761 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 87 542 - -
Cpe05g01441 1761 PANTHER GLUTAMATE RECEPTOR 3.4 1381 1470 - -
Cpe05g01441 1761 Pfam Receptor family ligand binding region 682 1031 IPR001828 -
Cpe05g01441 1761 Pfam Ligand-gated ion channel 1359 1410 IPR001320 GO:0015276|GO:0016020
Cpe05g01441 1761 Gene3D - 1397 1572 - -
Cpe05g01441 1761 SUPERFAMILY Periplasmic binding protein-like I 89 172 IPR028082 -
Cpe05g01441 1761 Pfam Ligand-gated ion channel 494 524 IPR001320 GO:0015276|GO:0016020
Cpe05g01441 1761 Gene3D - 191 265 - -
Cpe05g01441 1761 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 945 957 - -
Cpe05g01441 1761 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 738 766 - -
Cpe05g01441 1761 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 678 694 - -
Cpe05g01441 1761 Gene3D - 1087 1201 - -
Cpe05g01441 1761 SUPERFAMILY Periplasmic binding protein-like II 1068 1378 - -
Cpe05g01441 1761 SUPERFAMILY Periplasmic binding protein-like I 33 91 IPR028082 -
Cpe05g01441 1761 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1630 1719 - -
Cpe05g01441 1761 Pfam Ligand-gated ion channel 1499 1659 IPR001320 GO:0015276|GO:0016020
Cpe05g01441 1761 Gene3D - 73 184 - -
Cpe05g01441 1761 Pfam Bacterial extracellular solute-binding proteins, family 3 1102 1358 IPR001638 -
Cpe05g01441 1761 Gene3D - 444 500 - -
Cpe05g01441 1761 Gene3D - 1249 1327 - -
Cpe05g01441 1761 Gene3D - 1202 1248 - -
Cpe05g01441 1761 Gene3D - 266 398 - -
Cpe05g01441 1761 SUPERFAMILY Periplasmic binding protein-like I 662 1085 IPR028082 -
Cpe05g01441 1761 PANTHER GLUTAMATE RECEPTOR 3.4 31 88 - -
Cpe05g01441 1761 SUPERFAMILY Periplasmic binding protein-like II 156 495 - -
Cpe05g01441 1761 PANTHER GLUTAMATE RECEPTOR 3.4 654 1380 - -
Cpe05g01441 1761 PANTHER GLUTAMATE RECEPTOR 3.4 1498 1629 - -
Cpe05g01441 1761 PANTHER GLUTAMATE RECEPTOR 3.4 1630 1719 - -
Cpe05g01441 1761 PANTHER GLUTAMATE RECEPTOR 3.4 87 542 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00730 Cpe05g01441 CCT
Cpe05g01441 Cpe16g00443 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01441 Cpe-Chr5:10051077 Cpe16g00445 Cpe-Chr16:5732335 2.90E-11 dispersed
Cpe05g01441 Cpe-Chr5:10051077 Cpe05g01442 Cpe-Chr5:10070811 2.84E-75 tandem
Cpe16g00443 Cpe-Chr16:5718124 Cpe05g01441 Cpe-Chr5:10051077 5.37E-34 wgd
Cpe04g00730 Cpe-Chr4:7187633 Cpe05g01441 Cpe-Chr5:10051077 2.41E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01441 K05387 - csv:101215485 1337.4