Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g01447 | ATGATCGTCATGAACAACTCGATTACGGAACCATTCCTCCGTGATGCCAAATGTCAAGCTTCAGAAGAAACTGATCTTGAGAATGGAACGCAAGTTGTGGAAAGCAATTCTGACTTTGAAATGGAGGCATTCAATAAGCAGATTCAAGAGATTGAGATACAAGTAGATAAGCTTTCTGGACGTCTTGTTAACTTAAAGAATTTGCTAAGGGATGCTAATAAGGAATCAAAATCTGTTACAAAAGCGTCGGAGATGATAGTTATAAAGAAACGGATGGAGAAGTATATTAATGATGTGGGAAATATTGCACGCAATGTCAACGGGAAGCTACAAGTTATAACTGTAGATATCTTACTCCTTAGGCAGATGCCTGGACGTCAGATGGGAACTGCCTCAGACAGAGCAAGAATGAACATGACAAAGTTCGCCCTTCGTGAAATAGTTCAGGACGAGTATCGTGAAGTCGTAGAAAGACGAGTGATTACAGCAGTCACGGGTAGCAGTCCAGATGAGTTGGTGATTGATCACCTTATAGAAACTGGAATCAGTGAGCAAACGTTCCCAAATGCATTTGAACAAACGAGACAAGGGAAGGTCGTAAGTACCATGGACGAAATTCAAGAGCGACTCGATGCAGTGAAGGAGCTTGAGAAAAGGCTCTCGGAATTGCATCAGATTTACCTGAAAACAGCAGCTTTAGTGGAGGGTCAAGCTAAACCTTTGGATAACATAGAAAATCAGGGGAGGAACGCACAAGACCGCTCTCAGTCGAGGATCAAAGCAATCCAGGCGGTAAAGAACTTAGAGAAGGAATCAAGAAAAGGCGTGATGTACATAATCATCACAGTGCTGGTAGTAATAATCTTAAACCTCCTCCCAGCTGATCAGCCATGA | 894 | 42.39 | MIVMNNSITEPFLRDAKCQASEETDLENGTQVVESNSDFEMEAFNKQIQEIEIQVDKLSGRLVNLKNLLRDANKESKSVTKASEMIVIKKRMEKYINDVGNIARNVNGKLQVITVDILLLRQMPGRQMGTASDRARMNMTKFALREIVQDEYREVVERRVITAVTGSSPDELVIDHLIETGISEQTFPNAFEQTRQGKVVSTMDEIQERLDAVKELEKRLSELHQIYLKTAALVEGQAKPLDNIENQGRNAQDRSQSRIKAIQAVKNLEKESRKGVMYIIITVLVVIILNLLPADQP | 297 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10094018 | 10100502 | + | Cp4.1LG05g14450.1 | Cpe05g01447 | 470652 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g01447 | 297 | Coils | Coil | 41 | 82 | - | - | |
| Cpe05g01447 | 297 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 7 | 289 | - | - | |
| Cpe05g01447 | 297 | Coils | Coil | 203 | 226 | - | - | |
| Cpe05g01447 | 297 | Gene3D | - | 193 | 293 | - | - | |
| Cpe05g01447 | 297 | Pfam | Syntaxin | 44 | 237 | IPR006011 | GO:0016020 | |
| Cpe05g01447 | 297 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
| Cpe05g01447 | 297 | Gene3D | - | 36 | 160 | - | - | |
| Cpe05g01447 | 297 | PANTHER | SYNTAXIN | 7 | 289 | IPR045242 | - | |
| Cpe05g01447 | 297 | SUPERFAMILY | t-snare proteins | 39 | 253 | IPR010989 | GO:0016020|GO:0016192 | |
| Cpe05g01447 | 297 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe05g01447 | Cpe16g00449 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g01447 | Cpe-Chr5:10094018 | Cpe20g00409 | Cpe-Chr20:2339171 | 8.08E-36 | dispersed | |
| Cpe16g00449 | Cpe-Chr16:5752206 | Cpe05g01447 | Cpe-Chr5:10094018 | 2.58E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g01447 | K08486 | - | csv:101214355 | 315.464 |