Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01493 AAAATCAGTAGACTGCAGCACCATATACTTGTGCTCGTGCTGCAACAAAAATCGTCGGCTACACCCTCCAATCCTCTCTCTGTCTCAACTGTTTTTCTCGATCACTGTGCCCGCCGGAAACTGACATTGTCAGCGGAGCAAGCGGTGTCGCCGACTATGCGCACGCAAATGCACCTCCTTCTCCCCCGCCGTGGTTTTGGCCTCATTGGGGCTATTTTCTTTGCCATGGCCGTCCTTCAGTGGTTCACGGCGGTGGCTCAGCTCCAACACCGTGTGCTGGATCTACATTGGCTTCCTGCCACCGCCACGTGGTATGGAAGCCCCGAGGGCGACGGTAGCGATGGTGGAGCATGTGGGTATGGAAATTTAGTGGATGTGAGGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAATTCTGTTCAAAAACGGTGAAGGGTGTGGAGCATGTTACAAGGTGAAATGTCTAGACCAGAGGATTTGCTCTAGACGAGCCGTTACTGTAATCATCACCGACGAATGCCCCGGTGGGTATTGTTCTAATGGAAATACCCACTTCGATCTCAGCGGCGCCGCCTTTGGCCGTATGGCCATCGCCGGTGAAGGTGGGCAGCTCAGAAACAGAGGAGAAATCCCAATAATTTACCGACGAACTCCCTGTAAGTATCGAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCCACAGATTACTGGCTCTCTGTCTTGGTTGAATTCGAGGATGGGGATGGAGACATCGGTGCAATGCAAATAAAAGAAGGGAACTCGAGGGAGTGGCTGGAAATGAAGCATTTGTGGGGTGCAAATTGGTGCATAATTGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAGATTAACGACATTATCTACAGGAAGAACAGTCTATGGCATTTTGACTGCACCA 924 51.19 KISRLQHHILVLVLQQKSSATPSNPLSVSTVFLDHCARRKLTLSAEQAVSPTMRTQMHLLLPRRGFGLIGAIFFAMAVLQWFTAVAQLQHRVLDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPLKARVGAVSPILFKNGEGCGACYKVKCLDQRICSRRAVTVIITDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPIIYRRTPCKYRGKNIAFHVNEGSTDYWLSVLVEFEDGDGDIGAMQIKEGNSREWLEMKHLWGANWCIIGGPLKGPFSVRLTTLSTGRTVYGILTAP 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10298659 10303236 - Cp4.1LG05g15010.1 Cpe05g01493 470698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01493 308 Pfam Lytic transglycolase 135 213 IPR009009 -
Cpe05g01493 308 PRINTS Expansin/Lol pI family signature 137 155 IPR007118 GO:0005576
Cpe05g01493 308 PRINTS Expansin/Lol pI family signature 208 224 IPR007118 GO:0005576
Cpe05g01493 308 PRINTS Expansin/Lol pI family signature 114 132 IPR007118 GO:0005576
Cpe05g01493 308 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Cpe05g01493 308 PRINTS Expansin/Lol pI family signature 96 111 IPR007118 GO:0005576
Cpe05g01493 308 PANTHER EXPANSIN-B3 72 301 - -
Cpe05g01493 308 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 238 308 IPR007117 -
Cpe05g01493 308 Gene3D - 84 220 IPR036908 -
Cpe05g01493 308 Gene3D - 221 306 IPR036749 -
Cpe05g01493 308 SUPERFAMILY PHL pollen allergen 225 302 IPR036749 -
Cpe05g01493 308 Pfam Expansin C-terminal domain 227 301 IPR007117 -
Cpe05g01493 308 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 115 225 IPR007112 -
Cpe05g01493 308 PANTHER EXPANSIN-LIKE PROTEIN B1 72 301 - -
Cpe05g01493 308 SMART dpbb_1 133 215 IPR007112 -
Cpe05g01493 308 PRINTS Major pollen allergen Lol pI signature 135 146 IPR005795 GO:0005576|GO:0019953
Cpe05g01493 308 PRINTS Major pollen allergen Lol pI signature 274 291 IPR005795 GO:0005576|GO:0019953
Cpe05g01493 308 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Cpe05g01493 308 PRINTS Major pollen allergen Lol pI signature 245 260 IPR005795 GO:0005576|GO:0019953
Cpe05g01493 308 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Cpe05g01493 308 PRINTS Major pollen allergen Lol pI signature 229 244 IPR005795 GO:0005576|GO:0019953
Cpe05g01493 308 SUPERFAMILY Barwin-like endoglucanases 96 224 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00772 Cpe05g01493 CCT
Cpe05g01493 Cpe16g00785 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01493 Cpe-Chr5:10298659 Cpe08g00642 Cpe-Chr8:4293389 1.16E-29 dispersed
Cpe16g00785 Cpe-Chr16:7738643 Cpe05g01493 Cpe-Chr5:10298659 1.32E-135 wgd
Cpe04g00772 Cpe-Chr4:7401232 Cpe05g01493 Cpe-Chr5:10298659 1.10E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01493 K20628 - csv:101202998 446.432