Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01531 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATGTCTCGGAGGCGCTCTGGCGGTTGGAAATTAGCGATAATCAAGATGGAGGCGACGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTGTATTATATGAGAACTGGCTCTTGTAGCTATGGAAGTAATTGTCGCTTCAATCATCCTGTCTACGTTGCTCAGGGTGCTCTTTATAATGGGGAATTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACGGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAACATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGTTCTTATTATTTGCGCACGGGATCATGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCCCAGCCAGCACCAGTTGGGAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTAGTGGAATTCCTGCTTGGTCATTGCCTAGAGTGCAATACATGCCTGGTCCATGTGTACAAGGCCAACAATCTTATGTGCCTGTCCTGGTTTCTCCACCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGAGCAATGTCAGTCCTGTTCTTCCCAATCTTGGTTATAATTCTGTCAATTTGGAAGACTCGCATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCTAACGCTACCCGATCGACCCGACCAACCAGAATGCCGTTATTTTATGAACAATGGCACATGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGTGCTTGGGCTTCCTTCAAGACCCGGGCAAGCTGTATGTTCATACTACAGTATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAACTATGGCTTCACTCTGCCTGTGCTCAATTCATCTTTCATGAAGTATCCCAGCAACAACTATACGTTGTCATCGCACGATACCTTGCCCCAGACGATATCCAAATCGTCTGAATGGGTTCAGAAAGCTGATCCTCCGAACAACAAACAGCAAACTACCGATACGAAAGTCGATGATGGCACAGCTGAAGAGGTTTCCTCTGTTTCATGCTCATTATCAGGTGGTTCTGAAAGTTTACAAGATCAATCTGGTTGA 1308 45.34 MPDNLQVQRNAVPNQSPDVSEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCSYYLRTGSCKFGVSCKFNHPQPAPVGNMLPQARPGALGSAGTPFMPSSGLPYASGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPPQGAIAAQDWNTYVSNVSPVLPNLGYNSVNLEDSHSNGQLALSTSTLTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNVLGLPSRPGQAVCSYYSMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLNSSFMKYPSNNYTLSSHDTLPQTISKSSEWVQKADPPNNKQQTTDTKVDDGTAEEVSSVSCSLSGGSESLQDQSG 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10541426 10545343 + Cp4.1LG05g15270.1 Cpe05g01531 470736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01531 435 MobiDBLite consensus disorder prediction 387 406 - -
Cpe05g01531 435 MobiDBLite consensus disorder prediction 1 20 - -
Cpe05g01531 435 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cpe05g01531 435 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cpe05g01531 435 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cpe05g01531 435 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cpe05g01531 435 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cpe05g01531 435 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Cpe05g01531 435 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cpe05g01531 435 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cpe05g01531 435 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cpe05g01531 435 Gene3D - 275 352 - -
Cpe05g01531 435 Gene3D - 46 121 - -
Cpe05g01531 435 Gene3D - 122 170 - -
Cpe05g01531 435 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Cpe05g01531 435 SUPERFAMILY CCCH zinc finger 279 304 IPR036855 GO:0046872
Cpe05g01531 435 SUPERFAMILY CCCH zinc finger 319 344 IPR036855 GO:0046872
Cpe05g01531 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cpe05g01531 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cpe05g01531 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cpe05g01531 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cpe05g01531 435 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cpe05g01531 435 MobiDBLite consensus disorder prediction 387 435 - -
Cpe05g01531 435 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cpe05g01531 435 MobiDBLite consensus disorder prediction 1 17 - -
Cpe05g01531 435 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cpe05g01531 435 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 7 404 - -
Cpe05g01531 435 PANTHER PROTEIN PHOSPHATASE RELATED 7 404 - -
Cpe05g01531 435 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cpe05g01531 435 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01375 Cpe-Chr3:11100001 Cpe05g01531 Cpe-Chr5:10541426 7.76E-76 dispersed
Cpe05g01531 Cpe-Chr5:10541426 Cpe20g00333 Cpe-Chr20:1869479 1.29E-13 dispersed
Cpe15g00914 Cpe-Chr15:8766417 Cpe05g01531 Cpe-Chr5:10541426 4.53E-06 transposed
Cpe16g00747 Cpe-Chr16:7509290 Cpe05g01531 Cpe-Chr5:10541426 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49613 PF00642 zf-CCCH 3.80E-08 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01531 - - csv:101221933 835.869